BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53592.1

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg917002 jgi|Araly1|917002|Al_scaffold_0008_1753                    200    1e-50


> Ahg917002 jgi|Araly1|917002|Al_scaffold_0008_1753
Length=1257

 Score =  200 bits (108),  Expect = 1e-50
 Identities = 195/234 (83%), Gaps = 18/234 (8%)
 Strand=Plus/Plus

Query  602   CAAGTGTTTGCAATCCTCTGTCGAGTTTGTGGATTTCAAA---CGATTCAATGGACATGT  658
             ||||||||||||||||||| |||||||||| ||| |||||   | | ||   |||| |||
Sbjct  1029  CAAGTGTTTGCAATCCTCTCTCGAGTTTGTCGATCTCAAATTCCAAATCTCGGGACCTGT  1088

Query  659   T---G-CA--CAAATGAAGCTATTAAGGTACTTCTTAGAGAATT-GTGCTGCCCTCAAGA  711
             |   |  |   ||||||||||| ||||||||||||||||||||| | |||   |||||||
Sbjct  1089  TACAGAAATGAAAATGAAGCTAGTAAGGTACTTCTTAGAGAATTCG-GCTATACTCAAGA  1147

Query  712   AACTCACTCTACATTTGGATTATAATTCAACAGAAGATGAAACCATT-AAGAAACTCTTG  770
             ||||||||||||||||||||| ||| |||||||||||||||| | || | ||||||||||
Sbjct  1148  AACTCACTCTACATTTGGATTCTAAATCAACAGAAGATGAAATC-TTGACGAAACTCTTG  1206

Query  771   AAAATCCCAAGAGCCGCCTCTACGAAATGTGAGGTTGTCATTGTCA-AAATGTA  823
              |||||||||||   |||||||| |||||||||||||||||||||| ||| |||
Sbjct  1207  CAAATCCCAAGA---GCCTCTACCAAATGTGAGGTTGTCATTGTCATAAA-GTA  1256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34882469055


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5