BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53610.1
Length=333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949958 jgi|Araly1|949958|scaffold_801845.1 510 2e-144
Ahg949957 jgi|Araly1|949957|scaffold_801844.1 418 1e-116
> Ahg949958 jgi|Araly1|949958|scaffold_801845.1
Length=374
Score = 510 bits (276), Expect = 2e-144
Identities = 315/334 (94%), Gaps = 2/334 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTTACAATTTTTGACGCTCATCTTTCTCCTTTCTGCTGCTGTGATCTATCACATC 60
||||||| |||| ||||||||||| |||||||||| | ||||||||||||||| |||||
Sbjct 22 ATGTCTTCACAACTTTTGACGCTCCTCTTTCTCCTATGTGCTGCTGTGATCTACCACATT 81
Query 61 CCCGTCGTGACTTGCGAACCATGGTGCTCGGCGATGCCTTCTTCCACACCTGAGCAGTTA 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 82 CCCGTCGTGACTTGCGAACCATGGTGCTCGGCGATGCCTTCTTCCACAGCTGAGCAGTTA 141
Query 121 CAAGCCAACATTCAGC-TTGCTTGCAGTCGTGTGGATTGTACACCGATCCAACCCGGTGG 179
||| ||||||| | | |||||||||| | |||||||||| |||||||||||||||||||
Sbjct 142 CAATTCAACATT-AACTTTGCTTGCAGACATGTGGATTGTGCACCGATCCAACCCGGTGG 200
Query 180 ATTTTGCTATTACCCTAATACTTTACTAGACCATGCTTCGTTTGTCATGAACTCTTACTA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 ATTTTGCTATTACCCTAATACTTTACTAGACCATGCTTCGTTTGTCATGAACTCTTACTA 260
Query 240 CAAGAGTCAAGGTCGCACTTATGCTGCTTGTAGCTTCGGCAATACTGGTTACCTTATTTA 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CCAGAGTCAAGGTCGCACTTATGCTGCTTGTAGCTTCGGCAATACTGGTTACCTTATTTA 320
Query 300 TTCCGACCCAAGTACTGGCACATGTGAATTTTAA 333
||||||||||||| |||||||||||| |||||||
Sbjct 321 TTCCGACCCAAGTTCTGGCACATGTGTATTTTAA 354
> Ahg949957 jgi|Araly1|949957|scaffold_801844.1
Length=381
Score = 418 bits (226), Expect = 1e-116
Identities = 298/331 (90%), Gaps = 12/331 (4%)
Strand=Plus/Plus
Query 1 ATGTCTTTACAATTTTTGACGCTCATCTTTCTCCTT-TCTGCTGCTGTGATCTATCACAT 59
||||||| |||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||
Sbjct 21 ATGTCTTCACAACTTTTGACGCTCCTCTTTCT-CTTATCTGCTGCTGTGATCTACCACAT 79
Query 60 CCCCGTCGTGACTTG-CGAACCATGGTGCTCGGCGATGCCTTCTTCCACACCTGAGCAGT 118
||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 80 CCCCGTCGTGACTTGTAGAA-CATGGTGCTCGGCGATGCCTTCTTCCACAGCTGAGCAGT 138
Query 119 TACAAGCCAACATTCAGC-TTGCTTGCAGTCGTGTGGATTGTACACCGATCCAACCCGGT 177
||||| |||||||| | | ||||||||| || |||||||||| |||||||||||||||||
Sbjct 139 TACAATCCAACATT-AACTTTGCTTGCAATCATGTGGATTGTTCACCGATCCAACCCGGT 197
Query 178 GGATTTTGCTATTACCCTAATACTTTACTAGACCATGCTTCGTTTGTCATGAACTCTT-A 236
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
Sbjct 198 GGATTTTGCTATTACCCTAATACTTTACTAGAGCATGCTTCGTTTGTCATGAAC-CTTTA 256
Query 237 CTACA-AGAGTCAAGGTCGCACTTA-TGCTGCTTGTAGCTTCGGCAATACTGGTTACCTT 294
||||| | ||||||| |||| || | ||||||||||||| ||||||||||||||| ||
Sbjct 257 CTACACA-AGTCAAGACCGCA-TTGCTTCTGCTTGTAGCTTTGGCAATACTGGTTACATT 314
Query 295 ATTTATTCCGACCCAAGTACTGGCACATGTG 325
| ||||||||||||||| ||||||||||||
Sbjct 315 AGCTATTCCGACCCAAGTGCTGGCACATGTG 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11790077001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5