BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53640.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949968 jgi|Araly1|949968|scaffold_801855.1 815 0.0
> Ahg949968 jgi|Araly1|949968|scaffold_801855.1
Length=1913
Score = 815 bits (441), Expect = 0.0
Identities = 538/586 (92%), Gaps = 2/586 (0%)
Strand=Plus/Plus
Query 29 CTTGTTCAAAAGGGTTGAATCAGAGGTTGAAGGAAGACAGAATAAGCCAATTCTA-TGAA 87
||||||| ||||| |||| |||||||||||||||||| |||||||||| ||| | ||||
Sbjct 42 CTTGTTCCAAAGGATTGAGTCAGAGGTTGAAGGAAGATAGAATAAGCCCATT-AACTGAA 100
Query 88 TCTTTGTTATGTCAAATACTTAATTATCTTCCTACAAAGGATGTTGTTAAGACAAGCGTT 147
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 101 TCTTTGTTATGTCACATACTTAATTATCTTCCGACAAAGGATGTTGTTAAGACAAGCGTT 160
Query 148 TTATCCACAAGATGGAGAAGTCTCTGGCTTTTGGTTCCTAGTTTGGAATTGGATTCCCGA 207
|||||||| |||||||||||||| ||||| | ||||||| |||||||||||||||| ||
Sbjct 161 TTATCCACCAGATGGAGAAGTCTTTGGCTCTCGGTTCCTCGTTTGGAATTGGATTCTAGA 220
Query 208 GATTTCTCTGATTTCAATACCTTTGTGAGTTTTTGTGATAGGTATTTCGATTCCAATAGG 267
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GATTTCTCTGATTTCAATGCCTTTGTGAGTTTTTGTGATAGGTATTTCGATTCCAATAGG 280
Query 268 GTTCTATGCATAAACAAGCTCAAGTTAACTATTAGTGAAAATGAAGAAGATGGCTTTTAT 327
||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 281 GTTTTATGCATAAACAAGCTCAAGTTAACTATTGGTGACAATGAAGAAGATGGCTTTTAT 340
Query 328 CTCAAGTCATGGATTGATGCTGCAGCTAAGCGTAAGATCCAACATCTAGATGTTCAGTTT 387
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 341 CTCAAGTCATGGATTGATGCTGCAGCTAAGCGTAAGCTCCAACATCTAAATGTTCATTTT 400
Query 388 CTGCCTCAGTTTCATAAGATTCATTTTAATCTTTATAAATGTGAGGCACTGGTTTCCTTA 447
|||||||||||||||||||||| | | || ||||||||||||||| |||| || | ||||
Sbjct 401 CTGCCTCAGTTTCATAAGATTCCTCTAAACCTTTATAAATGTGAGACACTCGTATACTTA 460
Query 448 AGACTCTTTGAGGTGTCCTTGGATAAAGGCAGGATCTTCTCTTTCCCTTGTATGAAGACT 507
|| ||| ||||||| |||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct 461 AGCCTCGTTGAGGTAACCTTGGCTAAAGGCAGAATCGTCTCTTTCCCTTGTATGAAGACT 520
Query 508 ATGCATTTAGAAGATAACGTGTATCCCAATGAAGCCACTTTTAAGGAACTTATCTCTTGC 567
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 521 ATGCATTTAGAAGATAACGTGTATCCCAATGAAGCCACTTTCAAGAAACTTATCTCTTGT 580
Query 568 TGCCCTGTCTTGGAAGATTTAACGGTTATCATTTATGGGATGGATA 613
||||||||||||||||| || |||||||| || ||||| | |||||
Sbjct 581 TGCCCTGTCTTGGAAGACTTGACGGTTATTATATATGGCAAGGATA 626
Score = 584 bits (316), Expect = 6e-166
Identities = 414/461 (90%), Gaps = 7/461 (2%)
Strand=Plus/Plus
Query 643 GATGCCAAGTTTGTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAATATGTAT 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1307 GATGCCAAGTTTGTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAATGTGTAT 1366
Query 703 CCCAATGAATCCACTTTCAAGAAACTTATCTCTTGCTGCCCTGTCTTGGAAGACTTAACG 762
||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 1367 CCCAATGAAGCCACTTTCAAGAAGCTTATCTCTTGTTGCCCTGTCTTGGAAGACTTGACG 1426
Query 763 GTTATCATTTATGGGATGGATAGAAAAGTC-TTTCGGGTGCACTCTCAGTCACTAAAGAG 821
||||| || ||||||| ||||| ||| || |||| ||||||||||| ||||||||||||
Sbjct 1427 GTTATTATATATGGGAAGGATACTAAA-TCCTTTCCGGTGCACTCTCGGTCACTAAAGAG 1485
Query 822 GTTCAGTTTAAAACGAGTCTCTTCTTTCCTCCATGAGGTTGCTCTTTCGGGAGTTGTGAT 881
| ||| |||| ||| || |||||||||| | | ||| ||| ||||||||||||||||
Sbjct 1486 GCTCACTTTAGTACGGGTTTCTTCTTTCCAC--TCCGGT-GCTATTTCGGGAGTTGTGAT 1542
Query 882 TGATGCTCCTCTACTATGCTCTTTGAGGATTAACGATAATGTATCGAAAAGCTTCATAGT 941
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1543 CAATGCTCCTCGACTATGCTCTTTGAGGATTAAGGATAACGTATCGAAAAGCTTCATAGT 1602
Query 942 AAACAATTTGGGTTCTAATGACAAGTTAGATCTTTCTATCCTCTTTGGTTTATGGCATTT 1001
||| ||| | |||||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 1603 AAAAAATATAGGTTCTAATGCCAAGTTAGATCTTTCTATCCTCTTTGGTTTGTGGTATTT 1662
Query 1002 TGATGAAACAAGCGTTACATCAATGAGAAGTAGCATCGACAGATTTCTTCCAGGGATTTT 1061
||||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1663 TGATGAAGCAAGCGTTAGATCAAGGAGAAGTAGCATCCACAGATTTCTTCCAGGGATTTT 1722
Query 1062 AAGTGTTATGGAAATGACAATACATTCAC-CAGCTTTCATG 1101
|||||||| |||||||||||||||| | | || ||||||||
Sbjct 1723 AAGTGTTAGGGAAATGACAATACATCCGCGCA-CTTTCATG 1762
Score = 475 bits (257), Expect = 4e-133
Identities = 373/428 (87%), Gaps = 11/428 (3%)
Strand=Plus/Plus
Query 655 GTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAATATGTATCCCAATGAATCC 714
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 497 GTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAACGTGTATCCCAATGAAGCC 556
Query 715 ACTTTCAAGAAACTTATCTCTTGCTGCCCTGTCTTGGAAGACTTAACGGTTATCATTTAT 774
||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 557 ACTTTCAAGAAACTTATCTCTTGTTGCCCTGTCTTGGAAGACTTGACGGTTATTATATAT 616
Query 775 GGGATGGATAGAAAAGTC-TTTCGGGTGCACTCTCAGTCACTAAAGAGGTTCAGTTTAAA 833
|| | ||||| ||| || |||| ||||||||||| ||||||||||||| ||| ||||
Sbjct 617 GGCAAGGATACTAAA-TCCTTTCCGGTGCACTCTCGGTCACTAAAGAGGCTCACTTTAGT 675
Query 834 ACG-AGTCTCTTCTTTCCTCCATGAGGTTGCTCTTTCGGGAGTTGTGATTGATGCTCCTC 892
||| | | |||||||||| | | ||| ||| |||||||||||||||| |||||||||
Sbjct 676 ACGTATT-TCTTCTTTCCAC--TCCGGT-GCTATTTCGGGAGTTGTGATCAATGCTCCTC 731
Query 893 TACTATGCT-CTTTGAGGATTAACGATAATGTATCGAAAAGCTTCATAGTAAACAATTTG 951
||||||| | ||||||| || || ||||| ||||||||||||||||||||||||| ||
Sbjct 732 TACTATG-TGCTTTGAGCATCAATGATAACACATCGAAAAGCTTCATAGTAAACAATATG 790
Query 952 GGTTCTAATGACAAGTTAGATCTTTCTATCCTCTTTGGTTTATGGCATTTTGATGAAACA 1011
|| |||| || |||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 791 GGGTCTAGTGCCAAGTTAGATCTTTCTATCCTCTTTGGTTTGTGGGATTTTGATGAAGCA 850
Query 1012 AGCGTTACATCAATGAGAAGTAGCATCGACAGATTTCTTCCAGGGATTTTAA-GTGTTAT 1070
||| ||||||||| ||||||||||||| |||||||||| |||||||||| || | ||||
Sbjct 851 AGCCTTACATCAAGGAGAAGTAGCATCCACAGATTTCTCCCAGGGATTTCAAAG-GTTAA 909
Query 1071 GGAAATGA 1078
|||| |||
Sbjct 910 GGAACTGA 917
Score = 353 bits (191), Expect = 2e-96
Identities = 321/381 (84%), Gaps = 19/381 (5%)
Strand=Plus/Plus
Query 243 TGATAGGTATTTCGATTCCAAT-AGGGTTCTATGCATAAACAAGCTCAAGTTAACTATTA 301
||| |||| || |||||||||| | | || |||| ||||| ||||||||||||||||||
Sbjct 1077 TGA-AGGT-TTCCGATTCCAATAAAGCTT-TATGGATAAAAAAGCTCAAGTTAACTATT- 1132
Query 302 G-TGAAAATG-A-AGAA-GATGGCTTTTATCTCAAGTCATGGATTGATGCTGCAGCTAAG 357
| ||| | || | | || | || || ||||||||||||||||||||||||||||||||||
Sbjct 1133 GATGAGAGTGTAGATAATGGTGCCTCTTATCTCAAGTCATGGATTGATGCTGCAGCTAAG 1192
Query 358 CGTAAGATCCAACATCTAGAT-GTTCAGTT-TCTGCCTCAGTTTCATAAGATTCATTTTA 415
|||||| |||||||||| || ||||| || ||||||||| ||| |||||| || | |
Sbjct 1193 CGTAAGCTCCAACATCTT-ATTGTTCA-TTCTCTGCCTCATTTTTATAAGACTCCTGAAA 1250
Query 416 ATCTTTATAAATGTGAGGCACTGGTTTCCTTA-AGACTCTTTGAGGTGTCCTTGGATAAA 474
| |||||| |||||||| ||||||| | |||| | ||||||||| ||| ||||| || |
Sbjct 1251 ACCTTTATGAATGTGAGACACTGGTCTACTTACA-ACTCTTTGAAGTGGCCTTGAATGAT 1309
Query 475 GGCAGGATCT-TCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAACGTGTATCC 533
| || | | | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1310 GCCAAGTT-TGTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAATGTGTATCC 1368
Query 534 CAATGAAGCCACTTTTAAGGAA-CTTATCTCTTGCTGCCCTGTCTTGGAAGATTTAACGG 592
||||||||||||||| ||| || ||||||||||| ||||||||||||||||| || ||||
Sbjct 1369 CAATGAAGCCACTTTCAAG-AAGCTTATCTCTTGTTGCCCTGTCTTGGAAGACTTGACGG 1427
Query 593 TTATCATTTATGGGATGGATA 613
|||| || ||||||| |||||
Sbjct 1428 TTATTATATATGGGAAGGATA 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5