BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53650.1

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495444 jgi|Araly1|495444|fgenesh2_kg.8__1260__AT5G53650.1         678    0.0  


> Ahg495444 jgi|Araly1|495444|fgenesh2_kg.8__1260__AT5G53650.1
Length=444

 Score =  678 bits (367),  Expect = 0.0
 Identities = 426/453 (94%), Gaps = 9/453 (2%)
 Strand=Plus/Plus

Query  29   AAAATTCGTagaatcggagagatttgagaagagaacgaaggaagaagaagaagaggaaCG  88
            ||||||| |||||||||||| ||||||||||||||||||||||||||||| | | |   |
Sbjct  1    AAAATTCCTAGAATCGGAGAAATTTGAGAAGAGAACGAAGGAAGAAGAAG-A-A-G---G  54

Query  89   ATGGGGTACGTGTTTAGAGTACGATTGGCTTCTTTCTTCGCCGGAGCTGCGACTGCGTCT  148
            |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct  55   ATGGGGTACGTGTTGAGGGTAAGATTGGCTTCTTTCTTCGCCGGAGCTGCGACTGCGTCT  114

Query  149  TTTATCGGACTCTCCGTTCTCTACAAGGATTACAAAGTCGCTCACGAATCGATTTCTCAG  208
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  TTTATCGGACTCTCTGTTCTCTACAAGGATTACAAAGTCGCTCACGAATCGATTTCTCAG  174

Query  209  CAGGCGAAGTCTTTTCATGACTCTCTGGATAGAAGGATCTCTACTCTTGAAAGCTTGAGA  268
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  175  CAGGCAAAGTCTTTTCATGACTCTCTGGATAGAAGGATCTCTACTCTTGAAAGCTTGAGA  234

Query  269  CAAAGTGAAGCTCCTCAGCTTGCTGAGACAACTGAATAGTAATCTGTCTCGACATTGAAC  328
            |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct  235  CAAACTGAAGCTCCTCAGCTTGCTGAGACAACTGAATAGTA-TCTGTTTCGACATTGA-C  292

Query  329  ACTCTCTGCTTGGCAATGATGTTTTGAGTTGAGATGCTCTTTTTTCGGTTTTATGAATAA  388
            ||||||||||| ||||||||| ||||||||||||| |||||||| || |||| |||||||
Sbjct  293  ACTCTCTGCTTTGCAATGATGATTTGAGTTGAGATACTCTTTTT-CGCTTTTTTGAATAA  351

Query  389  CTTGGAAGTTCTTGTATGACTCTACTGTTATAAAACAATGAAGTTTAAGGTAGTCGACAA  448
            ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct  352  CTTGGGAGTTCTTGTATGACTCTACTGTTATGAAACAATGAAGTTTAAAGTAGTCTACAA  411

Query  449  TGGATTGAAACTTGCTGTAACACTTGCCATGAA  481
            |||||||||||||||||||||||||||||||||
Sbjct  412  TGGATTGAAACTTGCTGTAACACTTGCCATGAA  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18390993898


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5