BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53660.1
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949970 jgi|Araly1|949970|scaffold_801857.1 1690 0.0
> Ahg949970 jgi|Araly1|949970|scaffold_801857.1
Length=1152
Score = 1690 bits (915), Expect = 0.0
Identities = 1077/1154 (93%), Gaps = 16/1154 (1%)
Strand=Plus/Plus
Query 80 TTTTTAAAATCTCTAACCTTCATGGACTTTCTCAAAGTTTCAGACAAGACAACAATTCCA 139
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TTTTCAAAATCTCTAACCTTCATGGACTTTCTCAAAGTTTCAGACAAGACAACAATCCCA 60
Query 140 TATAGAAGTGATTCTTTGTTTAGTTTGAATCAGCAACAATACAAAGAGTCTTCTTTTGGA 199
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTAGAAGTGATTCTTTGTTTAGTTTGAATCAGCAACAATACAAAGAGTCTTCTTTTGGA 120
Query 200 TTCAGAGACATGGAGATTCATCCGCATCCT-A-CTC-C-A-T----ATGCAGGAAATGGA 250
||||||||||||||||||||||| |||||| | ||| | | | || |||||||||||
Sbjct 121 TTCAGAGACATGGAGATTCATCCTCATCCTCATCTCACTACTCCTTATTCAGGAAATGGA 180
Query 251 CTTTTGGGTTGTTATTACTATTACCCTTTCACAAACGCACAATTGAAGGAGCTTGAGAGA 310
||||||||||||| || || ||||||||||||||||||||| |||||||||| ||||||
Sbjct 181 GTTTTGGGTTGTTACTATTACTACCCTTTCACAAACGCACAACTGAAGGAGCTAGAGAGA 240
Query 311 CAAGCAATGATCTACAAGTACATGATCGCATCTATTCCTGTTCCTTTCGATCTACTTGTT 370
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 241 CAAGCAATGATCTACAAGTACATGATCGCATCTATTCCTGTTCCTTTTGATCTCCTTGTT 300
Query 371 TCTTCACCATCCTCTGCCTCTCCTTGTAACAATAAAAACATCGCCGGAGATTTAGAGCCG 430
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 301 TCATCACCATCCTCTGCTTCTCCCTGTAACAATAAAAACATCGCCGGAGATTTAGAACCG 360
Query 431 GGAAGATGCCGGAGAACAGACGGAAAGAAATGGAGATGCGCGAAAGAAGTCGTCTCTAAT 490
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 361 GGAAGATGCCGGAGAACAGACGGAAAGAAATGGAGATGCGCAAAAGAAGTCGTATCTAAT 420
Query 491 CACAAATACTGTGAGAAACACTTACACAGAGGTCGTCCTCGTTCAAGAAAGCATGTGGAA 550
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 CACAAATACTGTGAGAAACACTTACACAGAGGCCGTCCTCGTTCAAGAAAGCATGTGGAA 480
Query 551 CCTCCTTATTCTCGCCCTAACAACAATGGTGGTTCTGTGAAAAACAGAGATCTCAAAAAG 610
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 CCTCCTTATTCTCGTCCTAACAACAATGGTGGTTCTGTTAAAAACAGAGATCTCAAAAAT 540
Query 611 CTTCCTCAAAAGTTATCTAGTAGTTCCATC-AAAGACAAAACACTTGAGCCAATGGAGGT 669
||||||| |||| | |||| |||||| || |||||||||||||||||| |||| |||||
Sbjct 541 CTTCCTCGAAAGCTCTCTAATAGTTC-ATTTAAAGACAAAACACTTGAGACAATTGAGGT 599
Query 670 TTCATCATCAATCTCAAACTATAGAGACTCCAGAGGAAGTGAGAAATTTACTGTAT-TGG 728
||||||||| ||||||||||| ||||| || |||||||||||| ||||||| ||| ||
Sbjct 600 TTCATCATCCATCTCAAACTACAGAGAATCAAGAGGAAGTGAGGTATTTACTATATCTG- 658
Query 729 CAACAACAGAGCAAGAGAACAAGTATCTGAATTTCATAGATGTATGGTCCGATGGAGTAA 788
| |||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct 659 CGACAACAGAGCAAGAGAACAAGTATCTGAATTTTATCGATGTTTGGTCCGATGGTGTAA 718
Query 789 GATCATCTGAAAAACAGAGTACAAC---TTCAACACCTGTTTCTTCTTCCAATGGCAATC 845
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 719 GATCATCTGAAAAACAGAGTACAACAACTTCAACACCTGTTTCTTCTTCTAATGGCAATC 778
Query 846 TCTCTCTTTACTCGCTTGATCTCTCAATGGGAGGAAACAACTTAATGGGCCAAGACGAAA 905
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTCTCTTTACTCGCTTGATCTTTCAATGGGAGGAAACAACTTAATGGGCCAAGACGAAA 838
Query 906 TGGGCCTGATACAAATGGGCTTAGGTGTAATCGGGTCGGGTAGTGAGGATCATCACGGGT 965
||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 839 TGGGCTTGATACAAATGGGTTTAGGTGTAATCGGGTCGGGTCGTGAGGATCATAACGGGT 898
Query 966 ATGGTCCTTATGGTGTGACTTCTTCACTAGAGGAGATGTCAAGCTGGCTTGCTCCGATGT 1025
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGGTCCTTATGGTGTGACGTCTTCACTAGAGGAGATGTCAAGCTGGCTTGCTCCGATGT 958
Query 1026 CTACCACACCTGGTGGACCATTAGCGGAGATACTGAGGCCGAGTACGAATTTGGCGATCT 1085
||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 959 CTACCACGCCTGGTGGACCATTAGCGGAGATACTGAGGCCGAGTCCAAATTTGGTTATCT 1018
Query 1086 CTGGTGATATCGAATCGTATAGCTTGATGGAGACTCCCACTCCAAGCTCGTCCCCGTCTA 1145
||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1019 CTGGTGACATTGAATCGTATAGCTTGATGGAGACTCCGACTCCAAGCTCGTCGCCGTCTA 1078
Query 1146 GAGTGATGAAGAAGATGACTAGTTCAGTGTCCGACGAAAGCAGCCAGGTTTAGGAGTTAT 1205
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1079 GAGTGGTGAAGAAGATGACTAGTTCAGTGTCCGACGAAAGCAGCCAGATTTAGGAATTAT 1138
Query 1206 GGAGTTTGGTAATA 1219
||||||||||||||
Sbjct 1139 GGAGTTTGGTAATA 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49178562930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5