BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53680.1
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951982 jgi|Araly1|951982|scaffold_28100001.1 313 1e-84
Ahg917019 jgi|Araly1|917019|Al_scaffold_0008_1770 313 1e-84
> Ahg951982 jgi|Araly1|951982|scaffold_28100001.1
Length=710
Score = 313 bits (169), Expect = 1e-84
Identities = 257/299 (86%), Gaps = 7/299 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCACCACCACCAAAACTTCGATACAACATTCACAAAGATATACGTGGGGGGTTTG 60
|||||||| | ||| ||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 21 ATGTCTCA--A-CACGGAAACTTCGATACAACGTTCACAAAGATATTCGTGGAAAATTTG 77
Query 61 CCTTGGACAACAAGAAAGGAAGGCTTGATAAACTTCTTCAAACGTTTTGGTGAAATCATC 120
||||||||||||||| ||||||||||| |||||||||||||||||||||| || || |||
Sbjct 78 CCTTGGACAACAAGACAGGAAGGCTTGGTAAACTTCTTCAAACGTTTTGGAGAGATTATC 137
Query 121 CATG-TGAACGTCGTTTGTGATAGAGAAACAGATCGATCACAAGGATATGGCTTCGTCAC 179
| || | |||||||||| | ||| | ||||||| ||||||||||| |||||||| || ||
Sbjct 138 CGTGCT-AACGTCGTTTTTTATAAAAAAACAGACCGATCACAAGGCTATGGCTTTGTGAC 196
Query 180 GTTTAAAGACGCTGAATCTGCAACAAGA-GCTTGCAAGGATCCGAATCCGACTATTGAAG 238
||||| ||| |||||||| |||| || | ||||||||| ||||||||||||| || || |
Sbjct 197 GTTTAGAGATGCTGAATCCGCAAGAA-ACGCTTGCAAGAATCCGAATCCGACAATAGACG 255
Query 239 GACGAATAACTAATTGCAAACTCGCTTTCGTTGGTGCTAAAGTTAAACCTAACCAATCC 297
||||| | || |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 256 GACGAGTGACCAATTGCAAACTCGCTTCCCTTGGTGCTAAAGTTAAACCTAACCAATCC 314
> Ahg917019 jgi|Araly1|917019|Al_scaffold_0008_1770
Length=669
Score = 313 bits (169), Expect = 1e-84
Identities = 257/299 (86%), Gaps = 7/299 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCACCACCACCAAAACTTCGATACAACATTCACAAAGATATACGTGGGGGGTTTG 60
|||||||| | ||| ||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 1 ATGTCTCA--A-CACGGAAACTTCGATACAACGTTCACAAAGATATTCGTGGAAAATTTG 57
Query 61 CCTTGGACAACAAGAAAGGAAGGCTTGATAAACTTCTTCAAACGTTTTGGTGAAATCATC 120
||||||||||||||| ||||||||||| |||||||||||||||||||||| || || |||
Sbjct 58 CCTTGGACAACAAGACAGGAAGGCTTGGTAAACTTCTTCAAACGTTTTGGAGAGATTATC 117
Query 121 CATG-TGAACGTCGTTTGTGATAGAGAAACAGATCGATCACAAGGATATGGCTTCGTCAC 179
| || | |||||||||| | ||| | ||||||| ||||||||||| |||||||| || ||
Sbjct 118 CGTGCT-AACGTCGTTTTTTATAAAAAAACAGACCGATCACAAGGCTATGGCTTTGTGAC 176
Query 180 GTTTAAAGACGCTGAATCTGCAACAAGA-GCTTGCAAGGATCCGAATCCGACTATTGAAG 238
||||| ||| |||||||| |||| || | ||||||||| ||||||||||||| || || |
Sbjct 177 GTTTAGAGATGCTGAATCCGCAAGAA-ACGCTTGCAAGAATCCGAATCCGACAATAGACG 235
Query 239 GACGAATAACTAATTGCAAACTCGCTTTCGTTGGTGCTAAAGTTAAACCTAACCAATCC 297
||||| | || |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 236 GACGAGTGACCAATTGCAAACTCGCTTCCCTTGGTGCTAAAGTTAAACCTAACCAATCC 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18543616254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5