BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53690.1

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333271 jgi|Araly1|333271|fgenesh1_pm.C_scaffold_281000001         252    9e-67
  Ahg331721 jgi|Araly1|331721|fgenesh1_pm.C_scaffold_8001064           252    9e-67


> Ahg333271 jgi|Araly1|333271|fgenesh1_pm.C_scaffold_281000001
Length=210

 Score =  252 bits (136),  Expect = 9e-67
 Identities = 172/189 (91%), Gaps = 4/189 (2%)
 Strand=Plus/Plus

Query  24   TCTGCCCTCGGACTATGATCTTCTTAGGAAG-ACTTATAGCCGTATGAAACTGGAATGGT  82
            ||| ||||||||||||||  |||||||| || ||||||| |||| |  ||||||||||||
Sbjct  21   TCTACCCTCGGACTATGAAATTCTTAGG-AGTACTTATAACCGTCTCCAACTGGAATGGT  79

Query  83   CTACTCATGATCTCATCTCTCACTGTGTGCAAGAAGAGGAGAGGTTGACGAA-TGAAAAG  141
            | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  80   CGACTCATGATCTCATCTCTCACTGTGTGCAAGAAGAGGAGAGGTTGAC-AAGTGAAAAG  138

Query  142  AAGGAACATGATCTTGTTGCAGGTAAAGTCATATGTGATAAGAAAAGAAAGCAATATGAC  201
            || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  139  AAAGAACATGATCTTGTTACAGGTAAAGTCATATGTGATAAGAAAAGAAAGCACTATGAC  198

Query  202  GAGTGTTTA  210
             | ||||||
Sbjct  199  CAATGTTTA  207


> Ahg331721 jgi|Araly1|331721|fgenesh1_pm.C_scaffold_8001064
Length=210

 Score =  252 bits (136),  Expect = 9e-67
 Identities = 172/189 (91%), Gaps = 4/189 (2%)
 Strand=Plus/Plus

Query  24   TCTGCCCTCGGACTATGATCTTCTTAGGAAG-ACTTATAGCCGTATGAAACTGGAATGGT  82
            ||| ||||||||||||||  |||||||| || ||||||| |||| |  ||||||||||||
Sbjct  21   TCTACCCTCGGACTATGAAATTCTTAGG-AGTACTTATAACCGTCTCCAACTGGAATGGT  79

Query  83   CTACTCATGATCTCATCTCTCACTGTGTGCAAGAAGAGGAGAGGTTGACGAA-TGAAAAG  141
            | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  80   CGACTCATGATCTCATCTCTCACTGTGTGCAAGAAGAGGAGAGGTTGAC-AAGTGAAAAG  138

Query  142  AAGGAACATGATCTTGTTGCAGGTAAAGTCATATGTGATAAGAAAAGAAAGCAATATGAC  201
            || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  139  AAAGAACATGATCTTGTTACAGGTAAAGTCATATGTGATAAGAAAAGAAAGCACTATGAC  198

Query  202  GAGTGTTTA  210
             | ||||||
Sbjct  199  CAATGTTTA  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7943158288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5