BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53700.1
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916949 jgi|Araly1|916949|Al_scaffold_0008_1700 501 4e-141
Ahg918673 jgi|Araly1|918673|Al_scaffold_0777_2 99.0 6e-20
Ahg905423 jgi|Araly1|905423|Al_scaffold_0003_2551 65.8 6e-10
Ahg892255 jgi|Araly1|892255|Al_scaffold_0006_251 65.8 6e-10
Ahg892258 jgi|Araly1|892258|Al_scaffold_0006_254 58.4 1e-07
Ahg911175 jgi|Araly1|911175|Al_scaffold_0001_1429 56.5 4e-07
> Ahg916949 jgi|Araly1|916949|Al_scaffold_0008_1700
Length=723
Score = 501 bits (271), Expect = 4e-141
Identities = 567/704 (81%), Gaps = 43/704 (6%)
Strand=Plus/Plus
Query 79 ATGGAAGAATCCGCCGTCAGAGGTCTGGAATCGAAGGATAC-GAACAATCGTAAATGCTT 137
|||||||||||| |||||| || || ||||||| ||| || |||| | | ||| || |
Sbjct 1 ATGGAAGAATCCTCCGTCAAAGTTCAGGAATCGCTGGA-ACTGAACTGTAGAAAAAGCAT 59
Query 138 TAGTAAGATTTCCGTCGAGGGATACGACACTTCGGTTCAT-GAGTTTCCTCTCAAGCTCG 196
||| | ||||||||| || ||||| ||||||||| ||||| || | ||||||||||||||
Sbjct 60 TAGCACGATTTCCGTTGAAGGATATGACACTTCGCTTCATGGA-TATCCTCTCAAGCTCG 118
Query 197 CGTTG-GCAAAGCATTTCGCTTCATGCGGAAAGATTG-TAGATATTG-ATGTTCCCAGAG 253
||||| | |||||| ||||||||||||||||| || | || || || |||||| ||||
Sbjct 119 CGTTGAG-AAAGCACTTCGCTTCATGCGGAAAAATCGCAAG-TA-TGTTTGTTCCAAGAG 175
Query 254 ACTTTAAAAAGCGTATCCTCAAGAGTCCTCTCTTCATT-ATTTTTCATGCGAAAGAAGGA 312
||||||||| | ||||||||||||| |||||||||||| | |||| | | | |||
Sbjct 176 ACTTTAAAAGGGGTATCCTCAAGAGCCCTCTCTTCATTGA-TTTT--T--G---G--GGA 225
Query 313 GAAAGTCCCG-TAGACAAGGCATTGGAACTTAGTGGGACTGACGTGGGAGGATGGAATGT 371
||| || || |||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 226 GAAGGT-GCGAGAGACAAGGCATTGGAACTTAGTGGAAGTGACGTGGGACGATGGAATGT 284
Query 372 AGTCGTGAAGTCTCTACCCGGGCAGCAA-ATGTACAGA-GATCCTGGGGGAGTCGACCGC 429
|||||| ||| || ||||| ||||| || || ||| | ||||||| |||| || || |
Sbjct 285 AGTCGTTAAGGCTGTACCCCGGCAGGAAGAT-TAC-TATGATCCTGCGGGATTCAACTTC 342
Query 430 TTCAAAGGAGAACGC-ACGCTCATAGTTAAGGTATATGATACACCTTCTACGTTGTC-TA 487
|||| ||||||||| | | | | ||||||||||||||| ||||||| || || | ||
Sbjct 343 TTCAGGGGAGAACGCGA-GTTGGTGGTTAAGGTATATGATTTACCTTCTTCGGTG-CGTA 400
Query 488 AGATTGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCACCGGTA 547
|||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 401 AGATTGATGTCCAAATCGGGCTCTGTGAACATTTCTCTTCATGTGGAGAGGTCACCTGTG 460
Query 548 TAAGTGTTTTGGTCCACGGAAACTTGTGCTGTCACGAAAGTAAAG-CTCGAGTTGATATT 606
| | |||||| |||||||||| ||| || | ||||||||| |||| || | || ||||
Sbjct 461 TTACTGTTTTAGTCCACGGAATCTT-TG-T-TCACGAAAG-AAAGACTATAATTTCTATT 516
Query 607 ATGGGAAAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGAC---GTACCGCAGATGGA 663
|||||| ||||||||||||| ||||||| | |||||||||||| ||| | ||||||||
Sbjct 517 ATGGGAGAAGGATGTGTAGAGAAGGCGCAGCAACTAAGTGGACAATGTAACACAGATGGA 576
Query 664 TGGAAGATTGTAGTTTATTTTGTTGTGCCGCCAGCAG-GCAGA-AAATTAAAGCCTACTG 721
||||||||||||||| ||| |||| | |||| | || || || ||| ||||||||| |
Sbjct 577 TGGAAGATTGTAGTTGATTCTGTTATCCCGCTA--AGTGCTGATAAAAGAAAGCCTACCG 634
Query 722 GAAGTGGACATCCAACTATTGGAGTTGAGAGGATGAAGAAGGCT 765
| ||| ||||||| || ||| | |||||||||| ||||| |||
Sbjct 635 GCTGTGAACATCCAGCTGTTGTACTTGAGAGGATTAAGAAAGCT 678
> Ahg918673 jgi|Araly1|918673|Al_scaffold_0777_2
Length=711
Score = 99.0 bits (53), Expect = 6e-20
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 488 AGATTGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCACC 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 473 AGATTGATCTCCAGATCGGGCTGAGTAAACATTTCTCTTCATGTGGAGAGGTCACC 528
> Ahg905423 jgi|Araly1|905423|Al_scaffold_0003_2551
Length=960
Score = 65.8 bits (35), Expect = 6e-10
Identities = 40/42 (95%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 650
||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 592 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 632
> Ahg892255 jgi|Araly1|892255|Al_scaffold_0006_251
Length=789
Score = 65.8 bits (35), Expect = 6e-10
Identities = 40/42 (95%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 650
||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 553 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 593
> Ahg892258 jgi|Araly1|892258|Al_scaffold_0006_254
Length=747
Score = 58.4 bits (31), Expect = 1e-07
Identities = 40/44 (91%), Gaps = 2/44 (5%)
Strand=Plus/Plus
Query 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACGTA 652
||| ||| ||||||||||||||||||||||||||||| || |||
Sbjct 592 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTCGATGTA 634
> Ahg911175 jgi|Araly1|911175|Al_scaffold_0001_1429
Length=651
Score = 56.5 bits (30), Expect = 4e-07
Identities = 44/51 (86%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 492 TGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCAC 542
||||||| || | | | || | |||||||||||||||||||||||||||||
Sbjct 87 TGATCTCAAGCTTGCGTTGAGAAAACATTTCTCTTCATGTGGAGAGGTCAC 137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40029062850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5