BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53730.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495449 jgi|Araly1|495449|fgenesh2_kg.8__1265__AT5G53730.1 1299 0.0
> Ahg495449 jgi|Araly1|495449|fgenesh2_kg.8__1265__AT5G53730.1
Length=839
Score = 1299 bits (703), Expect = 0.0
Identities = 796/841 (95%), Gaps = 6/841 (1%)
Strand=Plus/Plus
Query 1 Gctttcttcttccactctttattaacccattcaccttctctcattcttctctgtccctct 60
||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 1 GCTTTCTTCTTCCACTCTTTATTAACCCATTCATCTTCTCTCCTTCTTCTCTATCCCTCT 60
Query 61 tcttggtcttcttcatcatcatcatc-tc-tctctccaaatgtctcaaatctcCATAACT 118
|||||||||||| ||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 61 TCTTGGTCTTCTCCATCATCATCATCATCATCTCTCCAAATGTCTCAAATCTCCATTACC 120
Query 119 TCTCCAAAACATTGCGCCAAGAAAGGAGGGATTAACATCAACAATCGCCACAAGAAACTA 178
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCCAAAACATTGTGCCAAGAAAGGAGGGATTAACATCAACAATCGCCACAAGAAACTC 180
Query 179 TTTTTCACATTCTCAACTTTCTTCTCTGGCCTTCTCCTCATCATCTTCCTCGTTTGGCTC 238
|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 181 TTTTTCACATTCTCAACTTTCTTCACCGGCCTTCTCCTCGTCATCTTCCTCGTTTGGCTC 240
Query 239 ATCCTCCACCCCGAGAGACCCGAGTTCTCCCTCACAGAAGCCGATATATACAGCCTCAAC 298
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ATCCTCCACCCCGAGAAACCCGAGTTCTCCCTCACCGAAGCCGATATATACAGCCTCAAC 300
Query 299 CTCACCACCTCCTCCACTCATCTCCTCAACTCTTCAGTCCAACTAACTCTCTTCTCCAAA 358
|||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 301 CTCACCTCCTCCTCCACTCATCTCCTCAACTCTTCAATCCAACTCACTCTCTTCTCCAAA 360
Query 359 AACCCTAACAAAAAAGTCGGGATCTACTACGACAAGCTACTCGTATATGCAGCGTATAGG 418
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 361 AACCCTAACAAAAAAGTTGGTATCTACTACGACAAGCTACTCGTATACGCAGCGTATAGG 420
Query 419 GGACAACAAATCACATCAGAGGCCTCTCTACCGCCTTTTTATCAATCCCATGAAGAAATC 478
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 421 GGACAACAAATCACATCGGAGGCTTCTCTACCGCCTTTTTATCAATCTCATGAAGAAATC 480
Query 479 AATCTCTTGACAGCGTTTCTTCAAGGGACTGAGCTACCCGTTGCCCAGTCCTTTGGTTAT 538
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 AATCTCTTGACAGCGTTTCTTCAAGGGACTGAGCTACCCGTTGCTCAGTCCTTTGGTTAT 540
Query 539 CAAATCAGTCGTGAACGGTCAACTGGTAAAATAATCATCGGTATGAAGATGGACGGGAAA 598
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 CAAATCAGTCGTGATCGGTCAACTGGTAAAATAATCATCGGTTTGAAGATGGACGGGAAG 600
Query 599 CTACGGTGGAAGATCGGGACATGGGTCTCGGGTGCATACCGGTTTAATGTGAATTGTCTT 658
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 601 CTACGGTGGAAGATCGGGACATGGGTCTCTGGCGCATACCGGTTTAATGTGAACTGTCTT 660
Query 659 GCAATTGTGGCTTTTGGA-ATGAACATGACCACTCCTCCCTTAGCTTCATTACAAGGGAC 717
|||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||
Sbjct 661 GCAATTGTGGCTTTTGGACA-GAACATGACCACTCCTCCATTAGCTTCAATACAAGGGAC 719
Query 718 TCGTTGCTCTACAACTATATGAGACTATATAGAATAATCAACCACATATACACTATAGtt 777
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 720 TCGTTGCTCTACAACTATATGAGATTATATAGAATCATCAACCACATATACACTATAGTT 779
Query 778 tttttCACTTATGCGCAATTGTTCT-TTCTGTCGACGTTTGTGGGCTGGTAATTAGTACT 836
| ||||||||||| ||||| ||||| || |||||| ||||||| ||||||| ||||||||
Sbjct 780 TCTTTCACTTATGTGCAATCGTTCTCTT-TGTCGATGTTTGTGTGCTGGTATTTAGTACT 838
Query 837 T 837
|
Sbjct 839 T 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5