BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53742.1 Length=348 Score E Sequences producing significant alignments: (Bits) Value Ahg495450 jgi|Araly1|495450|fgenesh2_kg.8__1266__AT5G53742.1 481 2e-135 Ahg495500 jgi|Araly1|495500|fgenesh2_kg.8__1316__AT5G53742.1 405 1e-112 Ahg917056 jgi|Araly1|917056|Al_scaffold_0008_1807 390 3e-108 Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805 363 6e-100 Ahg917075 jgi|Araly1|917075|Al_scaffold_0008_1826 174 3e-43 > Ahg495450 jgi|Araly1|495450|fgenesh2_kg.8__1266__AT5G53742.1 Length=344 Score = 481 bits (260), Expect = 2e-135 Identities = 318/346 (92%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 1 ATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTTTCCGTTGAATCCATTGTTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 60 Query 61 TCTGGCGCACCAACACACACGAAACCTCAATTCC-TTGTCATCCCTGGTTCTCCGATCGA 119 || || ||||| ||||||||| ||| ||||||| || |||||||||||||||||||||| Sbjct 61 TCAGGTGCACCCGCACACACGACACCGCAATTCCCTT-TCATCCCTGGTTCTCCGATCGA 119 Query 120 TCTCACAAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACTGAAATCTACAA 179 |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| Sbjct 120 CCTCACAAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGTGTAACTGAAATCCACAA 179 Query 180 ATCAGTTTTCACAGGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCAAGGCGTTTTCAG 238 | ||||||||||||||||||||| |||||||| | | |||||||||||||||||||||| Sbjct 180 AGCAGTTTTCACAGGAAAGTTTGATAATGTTGCACCA-ATGTGCTGCAAGGCGTTTTCAG 238 Query 239 CTGTGGATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCTTCCCTCCTCTTC 298 ||||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||| Sbjct 239 CTGTGGATGCCAAATGTTGGCCACAAATGTTTCCGTTTAATCCATTCTTCCCTCCTCTTC 298 Query 299 TCAAGAAGGAATGTTCTCCTATCAACGCAGCCACTCCTACACACAA 344 | ||||| |||||||||| |||||||| |||||||||||||||||| Sbjct 299 TGAAGAATGAATGTTCTCGTATCAACGAAGCCACTCCTACACACAA 344 > Ahg495500 jgi|Araly1|495500|fgenesh2_kg.8__1316__AT5G53742.1 Length=528 Score = 405 bits (219), Expect = 1e-112 Identities = 264/285 (93%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 67 GCACCAACACACACGAAACCTCAATT-CCTTGTCATCCCTGGTTCTCCGATCGATCTCAC 125 ||||| ||||||||| ||||||||| |||| |||||||||||||||||| ||||||||| Sbjct 247 GCACCCGCACACACGACACCTCAATTCCCTT-TCATCCCTGGTTCTCCGAACGATCTCAC 305 Query 126 AAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACTGAAATCTACAAATCAGT 185 ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| Sbjct 306 AAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGCGTAAGTGAAATCCACAAATCAGT 365 Query 186 TTTCACAGGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCAAGGCGTTTTCAGCTGTGG 244 |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 366 TTTCACAGGAAAGTTTGGTAATGTTGGACCA-ATGTGCTGCAAGGCGTTTTCAGCTGTGG 424 Query 245 ATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCTTCCCTCCTCTTCTCAAGA 304 ||| ||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||| Sbjct 425 ATGCAAAATATTGGCCACAGATGTTTCCGTTTAATCCGTTCTTCCCTCCTCTTCTCAAGA 484 Query 305 AGGAATGTTCTC-CTATCAACGCAGCCACTCCTACACACAAATGA 348 | |||||||||| | |||||||||||||||||||||||||| ||| Sbjct 485 ATGAATGTTCTCGC-ATCAACGCAGCCACTCCTACACACAAGTGA 528 > Ahg917056 jgi|Araly1|917056|Al_scaffold_0008_1807 Length=642 Score = 390 bits (211), Expect = 3e-108 Identities = 316/363 (87%), Gaps = 21/363 (6%) Strand=Plus/Plus Query 4 TTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATCTCT 63 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 283 TTTCCGTTGAATCCGTTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATGGCA 342 Query 64 GGCGCACCAACACACACGAAACCTCAATT--C---C-T---T--G--T-C-ATCCCTGGT 108 || ||||| ||||||||| ||||||||| | | | | | | | || |||||| Sbjct 343 GGTGCACCCGCACACACGACACCTCAATTCCCTGTCATCCCTGGGTTTCCTATTCCTGGT 402 Query 109 TCTCCGATCGATCTCACAAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACT 168 |||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||| Sbjct 403 TCTCCGGTCGATCTCACAAAATGTTTGTCATCACTTGTCAGCGTTCAAGGTTGCGTAACT 462 Query 169 GAAATCTACAAATCAGTTTTCACA-GGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCA 226 |||||||||||||||||||||||| |||| ||||| |||||||||| | ||||| |||| Sbjct 463 GAAATCTACAAATCAGTTTTCACACGGAA-GTTTGATAATGTTGGACCA-ATGTGTTGCA 520 Query 227 AGGCGTTTTCAGCTGTGGATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCT 286 ||||||| || || |||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 521 AGGCGTTGTCGGCAATGGATGCAAAATGTTGGCCACAAATGTTTCCACTAAATCCGTTCT 580 Query 287 TCCCTCCTCTTCTCAAGAAGGAATGTTCTC-CTATCAACGCAGCCACTCCTACACACAAA 345 |||||||||||||||| || |||||||||| | |||||| ||||| |||||||||||||| Sbjct 581 TCCCTCCTCTTCTCAAAAACGAATGTTCTCGC-ATCAACACAGCCGCTCCTACACACAAA 639 Query 346 TGA 348 ||| Sbjct 640 TGA 642 > Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805 Length=744 Score = 363 bits (196), Expect = 6e-100 Identities = 289/333 (87%), Gaps = 10/333 (3%) Strand=Plus/Plus Query 1 ATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 60 ||||||||| | ||||| ||||||||| ||||||| ||||||||||| |||| ||||| | Sbjct 271 ATGTTTCCGCTAAATCCGTTATTCCCTTCTCTTCTTAAGGATGGTTGTTCTCTCATCAGC 330 Query 61 TCTGGC-GCACCAACACACACGAAACCTCAATTCCT-TGTCATCCCTGGTTCTCCGATCG 118 | || ||||| |||||||| ||||||||| || |||||||||||||||| |||||| Sbjct 331 GC-AGCTGCACCCGCACACACGGCACCTCAATT-CTCTGTCATCCCTGGTTCTTCGATCG 388 Query 119 ATCTCACAAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACTGAAATCTACA 178 ||||||| |||||||||||||||||||| |||||| ||||||| ||||| |||||| ||| Sbjct 389 ATCTCACTAAATGTTTGTCATCACTTGTCAACGTTCAAGGTTGTGTAACAGAAATCCACA 448 Query 179 AATCAGTTTTCACAGGAAAGTTTGGTAATGTTGGA-TATATGTGCTGCAAGGCGTTTTCA 237 ||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||| Sbjct 449 AATCAGTTTTCACAGGAAACTTTGGTAATGTTGGAGCA-ATGTGCTGCAAAGCGTTTTCG 507 Query 238 GCTGTGGATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCTTCCCTCCTCTT 297 |||||||||| |||||||||||||||||||||||||||||||| |||||| ||| |||| Sbjct 508 GCTGTGGATGCAAAATGTTGGCCACAAATGTTTCCGCTAAATCGGTTCTTTCCTTTTCTT 567 Query 298 CTCAAGAAGGAA-TGTTCTC-CTATCAACGCAG 328 ||||| | || ||||||| | | |||||||| Sbjct 568 CTCAA-ATCTAAATGTTCTCGC-ACCAACGCAG 598 > Ahg917075 jgi|Araly1|917075|Al_scaffold_0008_1826 Length=324 Score = 174 bits (94), Expect = 3e-43 Identities = 126/141 (89%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 ATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 60 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 145 ATGTTTTCGTTGAATCCGTTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 204 Query 61 TCTGGCGCACCAAC---ACACACGAAACCTCAATTCCTTGTCATCCCTGGTTCTCCGATC 117 | || ||||| | |||||||| |||||| |||| ||||||| ||||||||||| || Sbjct 205 GCAGGTGCACCCGCTGCACACACGACACCTCAGTTCCCTGTCATCTCTGGTTCTCCGGTC 264 Query 118 GATCTCACAAAATGTTTGTCA 138 ||||||||||||||||||||| Sbjct 265 GATCTCACAAAATGTTTGTCA 285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12362410836 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5