BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53742.1
Length=348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495450 jgi|Araly1|495450|fgenesh2_kg.8__1266__AT5G53742.1 481 2e-135
Ahg495500 jgi|Araly1|495500|fgenesh2_kg.8__1316__AT5G53742.1 405 1e-112
Ahg917056 jgi|Araly1|917056|Al_scaffold_0008_1807 390 3e-108
Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805 363 6e-100
Ahg917075 jgi|Araly1|917075|Al_scaffold_0008_1826 174 3e-43
> Ahg495450 jgi|Araly1|495450|fgenesh2_kg.8__1266__AT5G53742.1
Length=344
Score = 481 bits (260), Expect = 2e-135
Identities = 318/346 (92%), Gaps = 4/346 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTCCGTTGAATCCATTGTTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 60
Query 61 TCTGGCGCACCAACACACACGAAACCTCAATTCC-TTGTCATCCCTGGTTCTCCGATCGA 119
|| || ||||| ||||||||| ||| ||||||| || ||||||||||||||||||||||
Sbjct 61 TCAGGTGCACCCGCACACACGACACCGCAATTCCCTT-TCATCCCTGGTTCTCCGATCGA 119
Query 120 TCTCACAAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACTGAAATCTACAA 179
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct 120 CCTCACAAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGTGTAACTGAAATCCACAA 179
Query 180 ATCAGTTTTCACAGGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCAAGGCGTTTTCAG 238
| ||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||
Sbjct 180 AGCAGTTTTCACAGGAAAGTTTGATAATGTTGCACCA-ATGTGCTGCAAGGCGTTTTCAG 238
Query 239 CTGTGGATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCTTCCCTCCTCTTC 298
||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 239 CTGTGGATGCCAAATGTTGGCCACAAATGTTTCCGTTTAATCCATTCTTCCCTCCTCTTC 298
Query 299 TCAAGAAGGAATGTTCTCCTATCAACGCAGCCACTCCTACACACAA 344
| ||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 299 TGAAGAATGAATGTTCTCGTATCAACGAAGCCACTCCTACACACAA 344
> Ahg495500 jgi|Araly1|495500|fgenesh2_kg.8__1316__AT5G53742.1
Length=528
Score = 405 bits (219), Expect = 1e-112
Identities = 264/285 (93%), Gaps = 6/285 (2%)
Strand=Plus/Plus
Query 67 GCACCAACACACACGAAACCTCAATT-CCTTGTCATCCCTGGTTCTCCGATCGATCTCAC 125
||||| ||||||||| ||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 247 GCACCCGCACACACGACACCTCAATTCCCTT-TCATCCCTGGTTCTCCGAACGATCTCAC 305
Query 126 AAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACTGAAATCTACAAATCAGT 185
||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct 306 AAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGCGTAAGTGAAATCCACAAATCAGT 365
Query 186 TTTCACAGGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCAAGGCGTTTTCAGCTGTGG 244
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 366 TTTCACAGGAAAGTTTGGTAATGTTGGACCA-ATGTGCTGCAAGGCGTTTTCAGCTGTGG 424
Query 245 ATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCTTCCCTCCTCTTCTCAAGA 304
||| ||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||
Sbjct 425 ATGCAAAATATTGGCCACAGATGTTTCCGTTTAATCCGTTCTTCCCTCCTCTTCTCAAGA 484
Query 305 AGGAATGTTCTC-CTATCAACGCAGCCACTCCTACACACAAATGA 348
| |||||||||| | |||||||||||||||||||||||||| |||
Sbjct 485 ATGAATGTTCTCGC-ATCAACGCAGCCACTCCTACACACAAGTGA 528
> Ahg917056 jgi|Araly1|917056|Al_scaffold_0008_1807
Length=642
Score = 390 bits (211), Expect = 3e-108
Identities = 316/363 (87%), Gaps = 21/363 (6%)
Strand=Plus/Plus
Query 4 TTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATCTCT 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 283 TTTCCGTTGAATCCGTTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATGGCA 342
Query 64 GGCGCACCAACACACACGAAACCTCAATT--C---C-T---T--G--T-C-ATCCCTGGT 108
|| ||||| ||||||||| ||||||||| | | | | | | | || ||||||
Sbjct 343 GGTGCACCCGCACACACGACACCTCAATTCCCTGTCATCCCTGGGTTTCCTATTCCTGGT 402
Query 109 TCTCCGATCGATCTCACAAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACT 168
|||||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 403 TCTCCGGTCGATCTCACAAAATGTTTGTCATCACTTGTCAGCGTTCAAGGTTGCGTAACT 462
Query 169 GAAATCTACAAATCAGTTTTCACA-GGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCA 226
|||||||||||||||||||||||| |||| ||||| |||||||||| | ||||| ||||
Sbjct 463 GAAATCTACAAATCAGTTTTCACACGGAA-GTTTGATAATGTTGGACCA-ATGTGTTGCA 520
Query 227 AGGCGTTTTCAGCTGTGGATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCT 286
||||||| || || |||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 521 AGGCGTTGTCGGCAATGGATGCAAAATGTTGGCCACAAATGTTTCCACTAAATCCGTTCT 580
Query 287 TCCCTCCTCTTCTCAAGAAGGAATGTTCTC-CTATCAACGCAGCCACTCCTACACACAAA 345
|||||||||||||||| || |||||||||| | |||||| ||||| ||||||||||||||
Sbjct 581 TCCCTCCTCTTCTCAAAAACGAATGTTCTCGC-ATCAACACAGCCGCTCCTACACACAAA 639
Query 346 TGA 348
|||
Sbjct 640 TGA 642
> Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805
Length=744
Score = 363 bits (196), Expect = 6e-100
Identities = 289/333 (87%), Gaps = 10/333 (3%)
Strand=Plus/Plus
Query 1 ATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 60
||||||||| | ||||| ||||||||| ||||||| ||||||||||| |||| ||||| |
Sbjct 271 ATGTTTCCGCTAAATCCGTTATTCCCTTCTCTTCTTAAGGATGGTTGTTCTCTCATCAGC 330
Query 61 TCTGGC-GCACCAACACACACGAAACCTCAATTCCT-TGTCATCCCTGGTTCTCCGATCG 118
| || ||||| |||||||| ||||||||| || |||||||||||||||| ||||||
Sbjct 331 GC-AGCTGCACCCGCACACACGGCACCTCAATT-CTCTGTCATCCCTGGTTCTTCGATCG 388
Query 119 ATCTCACAAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACTGAAATCTACA 178
||||||| |||||||||||||||||||| |||||| ||||||| ||||| |||||| |||
Sbjct 389 ATCTCACTAAATGTTTGTCATCACTTGTCAACGTTCAAGGTTGTGTAACAGAAATCCACA 448
Query 179 AATCAGTTTTCACAGGAAAGTTTGGTAATGTTGGA-TATATGTGCTGCAAGGCGTTTTCA 237
||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||
Sbjct 449 AATCAGTTTTCACAGGAAACTTTGGTAATGTTGGAGCA-ATGTGCTGCAAAGCGTTTTCG 507
Query 238 GCTGTGGATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCTTCCCTCCTCTT 297
|||||||||| |||||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 508 GCTGTGGATGCAAAATGTTGGCCACAAATGTTTCCGCTAAATCGGTTCTTTCCTTTTCTT 567
Query 298 CTCAAGAAGGAA-TGTTCTC-CTATCAACGCAG 328
||||| | || ||||||| | | ||||||||
Sbjct 568 CTCAA-ATCTAAATGTTCTCGC-ACCAACGCAG 598
> Ahg917075 jgi|Araly1|917075|Al_scaffold_0008_1826
Length=324
Score = 174 bits (94), Expect = 3e-43
Identities = 126/141 (89%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 1 ATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 ATGTTTTCGTTGAATCCGTTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 204
Query 61 TCTGGCGCACCAAC---ACACACGAAACCTCAATTCCTTGTCATCCCTGGTTCTCCGATC 117
| || ||||| | |||||||| |||||| |||| ||||||| ||||||||||| ||
Sbjct 205 GCAGGTGCACCCGCTGCACACACGACACCTCAGTTCCCTGTCATCTCTGGTTCTCCGGTC 264
Query 118 GATCTCACAAAATGTTTGTCA 138
|||||||||||||||||||||
Sbjct 265 GATCTCACAAAATGTTTGTCA 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12362410836
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5