BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53750.1
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495451 jgi|Araly1|495451|fgenesh2_kg.8__1267__AT5G53750.1 2122 0.0
> Ahg495451 jgi|Araly1|495451|fgenesh2_kg.8__1267__AT5G53750.1
Length=1396
Score = 2122 bits (1149), Expect = 0.0
Identities = 1323/1405 (94%), Gaps = 19/1405 (1%)
Strand=Plus/Plus
Query 1 ATCTTCTCCTTCACATTCTCTGCaaaaaaaaaaaaaaaaaTTCTTCTTTTATGGCATTAA 60
||||||||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 1 ATCTTCTCCTTCACATTCTCTGC-------AAAAACCAAATTCTTCTCTTATGGCATTAA 53
Query 61 CCCTTTTGTCTCACGAATTATCTGACCTCTGTATCGGTAAGCCACCTTTACGGTGTCTCT 120
|||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||
Sbjct 54 CCCTTTTGTCTCACAAAGTATCTGACCTCTGTATCGGTAAGCCACCTTTATGTTGTCTCT 113
Query 121 CCGTCGCCACAGCCACCGTAGCTGACGCCATCGCCGCTCTCAAATCCTCTGACGAACCGT 180
|||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 114 CCGTCGTCACAGCCACCGTCTCTGACGCCATCGCCGCTCTCAAATCCTCTGATGAACCAT 173
Query 181 TCCTCACCGTATGGAGCTGTAATCACGATGAGAAAACAGATGATAATGATAAGTGTGAGT 240
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 174 ACCTCACCGTATGGAGCTGTAATCACGATGAGAAAACAGAGGATAATGATAAGTGTGAGT 233
Query 241 GTTTGGGTAAGATCTGTATGGCTGATGTAATCTGTTACCTATCCAAATTCGACAACAATG 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 234 GTTTGGGTAAGATCTGTATGGCTGATGTAATCTGTTACCTATCGAAATTCGACAACAATG 293
Query 301 TTTTGTCTCTTTCCTCTGCTTTCGACGCATCTGTCTCTGTTCTTCTTCCCAAATCTCGTG 360
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 294 TTTTGTCTCTTTCCTCTGCTTTCGACGAATCTGTCTCTGTTCTTCTTCCCAAATCTTGTT 353
Query 361 CCCTCGTCGTCCATGTTCAATCTTCTTGCAGTTTGATTGAAGCTATTGATCTGATAATCA 420
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 354 CTCTCGTCGTCCATGTTCAATCTTCTTGCAATTTGATTGAAGCTATTGATCTGATAATCA 413
Query 421 AAGGAGCACAGAATCTGATTGTTCCGATTCATACGAAATCAATCACAAAGAGAAGACAAC 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 414 AAGGAGCACAGAATCTGATTGTTCCGATTCAGACGAAATCAATCACAAAGAGAAGACAAC 473
Query 481 AACAAAAACTTCTGA-AACGAAACGTCGTCGTTTCACTCACCAACGCAACTTCAACAACC 539
||||||||||| ||| || |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 474 AACAAAAACTTTTGACAA-GAAACGTCGTCGTTTCCCTCACCAACACAACTTCAACAACC 532
Query 540 CACAAAAACAGCCGAGAATTCTGCTGGATCACACAAGAAGACATTATTCGATTCCTTCTC 599
|| || ||||||||| ||||||||||||||||||||||||| || || ||||||||||||
Sbjct 533 CATAAGAACAGCCGACAATTCTGCTGGATCACACAAGAAGATATAATACGATTCCTTCTC 592
Query 600 GATTCCATTAGCGTTTTCTCTCCATTACCGTCGCTTTCTATCTCCGATCTTGGAGTTATC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GATTCCATTAGCGTTTTCTCTCCATTACCGTCGCTTTCTATCTCCGATCTTGGAGTTATC 652
Query 660 AATAGTACACACACTATCCTCGCCGTTGATTACTACTCCTCAGCTGCTTCCGCCGTCTCT 719
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 653 AATAGTACACACACTATCCTCGCCGTTGATTATTACTCCTCAGCTGCTTCCGCCGTCTCC 712
Query 720 GCCATCTCTCGTGCCATCTTGGACAATGTCTCTGTCGCGGTGGTTGGTAAAGGATGTGAT 779
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 713 ACCATCTCTCGTGCTATCTTGGACAATGTCTCTGTCGCGGTGGTTGATAAAGGATGTGAT 772
Query 780 CAAGAAGATCCATGTATGGTTTTGATAGGCGAGATTTCACCGATGACACTCGCTTGCTGC 839
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||
Sbjct 773 CAAGAAGATCCATGTATGGCTTTGATAGGTGAGATTTCACCGATGACACTCGCTTGTTGC 832
Query 840 GATGAAACTGCCGTAGCAGCGGTTGCTACACTCTCTGCCGGAGATTTAATGTCCTATATC 899
|||||||| || || ||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 833 GATGAAACCGCTGTCGCAGCGGTTGCTACACTCTCTGCTGGAGATCTAATGTCGTATATC 892
Query 900 GACGGTAGTGGTCCGCCGGAGAGTCTAGTTGGAGTAGTTAGGAATCGTTTGGAAGATAAA 959
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 893 GACGGTAGTGGTCCGCCCGAGAGTCTAGTTGGAGTTGTTAGGAATCGTTTGGAAGATAAA 952
Query 960 GGGATGGTTGGATTAATCTCACTCATTGATTCTTTGTCGTTGTCGTCGGGGTCTTCCTCG 1019
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 953 GGGATGGTTGGATTGATCTCACTCATTGAATCTTTGTCGTTGTCGTCGGGGTCTTCGTCG 1012
Query 1020 GATGAAGAATCTCCGGCGGGGAAGACGAGAATGACTTCTTCGTATGGGAGGTCGGTGAGT 1079
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1013 GATGAAGAATCTCCGGCGGGGAGGACGAGAATGACGTCTTCGTATGGGAGGTCGGTTAGT 1072
Query 1080 AGCGCGGCGAGGATGGCTAGGAAATCGGTGGCGATAGTGTGTAATCGGAAGAGTTCTTTA 1139
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1073 AGCGCGGCGAGGATGTCGAGGAAATCGGTGGCGATAGTGTGTAATCGGAAGAGTTCGTTA 1132
Query 1140 ATGGCGGTGATGATACAAGCTATTGCTCATAGAGTGAGTTATGTGTGGGTGATTGATGAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 ATGGCGGTGATGATACAAGCTATTGCTCATAGAGTGAGTTATGTGTGGGTGATTGATGAA 1192
Query 1200 GATGGTTGTTTGATTGGTATGGTTACTTTTGTTGATATATTGAAACTTTTTAGGGAATTT 1259
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1193 GATGGTTGTTTGATTGGTATGGTTACTTTTGTTGATATTTTGAAACTTTTTAGGGAATTT 1252
Query 1260 TTGGATGATGAAAACTAAAATCATATGATATAGTTCAGTTTTATTTTGATTTTTGTTAGA 1319
||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1253 TTGGATGGTGAAAACTAAAATCATAAGATATACTTCAGTTTTATTTTCATTTTTGTTAGA 1312
Query 1320 AATTATTGAAATCTAGCAACGAAAATTTGTT-GTTTAAG-T--T-----GGTTAAATAGG 1370
||||||||||| |||||||| |||||| ||| ||||||| | | ||| |||||||
Sbjct 1313 AATTATTGAAACCTAGCAACAAAAATT-GTTTGTTTAAGATAATCTTTTGGTGAAATAGG 1371
Query 1371 CCATAATACAAAAGTTCTTGCAATA 1395
|||||||||||||||||||||||||
Sbjct 1372 CCATAATACAAAAGTTCTTGCAATA 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5