BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53760.1
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495453 jgi|Araly1|495453|fgenesh2_kg.8__1269__AT5G53760.2 3075 0.0
> Ahg495453 jgi|Araly1|495453|fgenesh2_kg.8__1269__AT5G53760.2
Length=2148
Score = 3075 bits (1665), Expect = 0.0
Identities = 1895/2005 (95%), Gaps = 20/2005 (1%)
Strand=Plus/Plus
Query 271 AAAGCTTTTCCTAATTTCTTGGAGTCTACAGATTTCAAAGTTTCTGGGTTACTACCAAAG 330
||||| ||||| | |||||||||||||||| || ||||||||| |||||||| ||||||
Sbjct 99 AAAGCGTTTCCGAGTTTCTTGGAGTCTACAAATCTCAAAGTTTATGGGTTACGACCAAAC 158
Query 331 TAGAATCTCAGTTTTTGTC-TAAGCTAATCAGATTTCTGCGATTCTGATTGTTAACTAAT 389
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || |
Sbjct 159 TAGAATCTCAGTTTTTGTCTTAAGCCAATCAGATATCTGCGATTCTGATTGTTAATTACT 218
Query 390 CCAAGAACGATCGATGGGGGTTTAAAGTTGAATTTGGGTCTAGAGGAGGAACTTGTTTTG 449
||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 219 CCAAGAACGCTAGATGGGTTTTTAAAGTTGAATTTGGGTAGAGAGGAGGAACTTGTTTTG 278
Query 450 TTTTTGTGAAGAATCAGACTTTAAAAG-AAATGGGAGAAGGAGAAGAAAATGGAAATGAA 508
||| ||| ||||||| |||||| | ||||||||||||||||||||||||| ||||||
Sbjct 279 TTTGTGTAAAGAATCCGACTTTTTTTGAAAATGGGAGAAGGAGAAGAAAATGGTAATGAA 338
Query 509 GCAGATTCAAATGAGAGATCTTTGGCATTGTCACCTACTTGGTCTGTTGCTATTGTCTTG 568
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 339 GCAGATTCAAATGAGAGATCTTTGGCATTGTCACCTACTTGGTCTGTTGCTATAGTGTTG 398
Query 569 ACTGTTTTCGTTGTTGTTTCTTTGATCGTTGAGCGCTCCATTTATCGTCTCAGCACTTGG 628
||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 399 ACTGTCTTCGTTGTTGTTTCTTTGATCGTTGAGCGCTCCATTTACCGTCTTAGCACTTGG 458
Query 629 TTGAGAAAAACAAAGAGGAAACCTATGTTTGCTGCATTAGAGAAGATGAAAGAAGAGTTG 688
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TTGAGGAAGACAAAGAGGAAACCTATGTTTGCTGCATTAGAGAAGATGAAAGAAGAGTTG 518
Query 689 ATGCTGCTTGGCTTCATTTCACTTCTAT-TAACAGCTACCTCAAGTACAATAGCCAATAT 747
||||||||||| ||||| |||||||| | ||||||||||||| |||||||||||||| ||
Sbjct 519 ATGCTGCTTGGATTCATATCACTTCT-TCTAACAGCTACCTCTAGTACAATAGCCAACAT 577
Query 748 ATGTGTCCCTTCAAGTTTCTACAATGACAGATTTCTTCCGTGTACACGATCTGAGATCCA 807
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 578 ATGTGTCCCGTCAAGTTTCTACAACGACAGATTTGTTCCGTGTACACGATCTGAGATCCA 637
Query 808 AGAGGAGCTCGAAAGCGGTTCAACTGTCAAGCGGAATCTTTTAACAAAATCCCTCTTTTT 867
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 638 AGAGGAGCTAGAAAGCGGTTCAACTGTCAAGCGGAATCTTTTAACAAAATCACTCTTTTT 697
Query 868 CAACATCTTTAGGAGAAGGTTGGATGTCATAAAACGAACCACCTGCAGCGAGGGGCATGA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 CAACATCTTTAGGAGAAGGTTGGATGTCATAAAACGAACCACCTGCAGCGAGGGGCATGA 757
Query 928 GCCGTTTGTTTCATATGAAGGCCTTGAACAGTTGCATCGCTTCATCTTTATAATGGCAGT 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 758 GCCGTTTGTTTCATATGAAGGCCTTGAACAGTTGCATCGCTTCATCTTTATAATGGCTGT 817
Query 988 TACTCATGTAACTTATAGCTGCTTGACCATGCTCCTTGCAATCGTCAAGATTCATAGTTG 1047
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TACACATGTAACTTACAGCTGCTTGACCATGCTCCTTGCAATCGTCAAGATTCATAGTTG 877
Query 1048 GAGGATATGGGAAGATGTAGCTCGTCTAGATAGACACGATTGCTTAACTGCGGTGGCACG 1107
|||||| |||||||||||||||||| | ||| |||| ||||||||||||| |||||||||
Sbjct 878 GAGGATCTGGGAAGATGTAGCTCGTATGGATCGACATGATTGCTTAACTGTGGTGGCACG 937
Query 1108 TGAAAAAATATTCCGAAGGCAAACAACGTTTGTCCAGTATCATACATCAGCACCTCTGGC 1167
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 938 GGAGAAAATATTCCGAAGGCAAACAACGTTTGTCCAGTATCATTCATCAGCACCTATGGC 997
Query 1168 CAAGAATAGAATT-CTTATATGGGTGACATGTTTCTTCCGGCAATTCGGACGTTCTGTTG 1226
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 CAAGAATAG-ATTGCTTATATGGGTGACATGTTTCTTCCGGCAATTCGGACGTTCTGTTG 1056
Query 1227 ATCGTTCTGACTATCTTACTCTCCGCAAAGGATTCATTGTGAATCACCACCTCACATTAA 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 ATCGTTCTGACTATCTTACTCTCCGCAAAGGATTCATTGTGAATCACCACCTCACATTAA 1116
Query 1287 AGTACGATTTTCACAGCTACATGATTCGTTCTATGGAAGAAGAGTTCCAAAGGATCGTTG 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AGTACGATTTTCACAGCTACATGATTCGTTCTATGGAAGAAGAGTTCCAAAGGATCGTTG 1176
Query 1347 GTGTGAGTGGGCCGCTTTGGGGTTTCGTAGTTGCTTTCATGCTCTTTAACATAAAAGGAT 1406
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 1177 GTGTGAGTGGGCCGCTTTGGGGATTCGTAGTTGCTTTCATGCTCTTTAATATAAAAGGGT 1236
Query 1407 CAAATCTTTACTTCTGGATAGCGATTATTCCTGTAACCCTTGTTCTTCTGGTTGGTGCTA 1466
| |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1237 CGAATCTTTATTTCTGGATAGCGATCATTCCTGTTACTCTTGTTCTTCTGGTTGGTGCTA 1296
Query 1467 AGTTGCAACACGTAATAGCAACTTTGGCATTGGAGAATGCCGGGTTAACCGAGTATCCTT 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 AGTTGCAACACGTAATAGCAACTTTGGCATTGGAGAATGCCGGGTTAACCGAGTATCCTT 1356
Query 1527 CCGGAGTAAAGCTGAGACCTCGAGATGAACTTTTCTGGTTCAATAAACCAGAACTACTCT 1586
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1357 CCGGAGTGAAGCTGAGACCTCGGGATGAACTTTTCTGGTTCAATAAACCAGAACTACTCT 1416
Query 1587 TGTCCCTTATCCATTTCATTCTGTTTCAGAATTCTTTTGAACTGGCTTCGTTCTTCTGGT 1646
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 TGTCCCTTATTCATTTCATTCTGTTTCAGAATTCTTTTGAACTGGCTTCGTTCTTCTGGT 1476
Query 1647 TCTGGTGGCAGTTTGGGTACAGCTCTTGCTTCCTTAAGAACCATTACCTTGTTTACTTCA 1706
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1477 TCTGGTGGCAGTTTGGGTACAGCTCTTGCTTCCTTAAGAATCATTACCTTGTTTACTTCA 1536
Query 1707 GACTTCTTTTAGGGTTTGCTGGACAGTTTCTATGCAGCTACAGTACACTGCCACTATATG 1766
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1537 GACTTCTTTTAGGATTTGCTGGACAGTTTCTATGCAGCTACAGCACACTGCCACTTTATG 1596
Query 1767 CACTAGTCACTCAGATGGGAACGAACTATAAAGCGGCTCTTATACCTCAGAGAATAAGAG 1826
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1597 CACTAGTCACTCAGATGGGAACGAACTATAAAGCGGCTCTGATACCTCAGAGGATAAGAG 1656
Query 1827 AGACGATTCGCGGTTGGGGTAAAGCAACGAGAAGGAAAAGAAGGCACGGGTTATATGGCG 1886
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1657 AGACGATTCGCGGTTGGGGAAAAGCAACCAGAAGGAAAAGAAGGCACGGGTTATATGGCG 1716
Query 1887 ATGATTCAACAGTTAGAACAGAAACAAGCACAATTGCATC-ACTTGAAGAATATGATCAT 1945
|||||||||| |||||||||||||||||||| |||||||| | ||||||||||||| |||
Sbjct 1717 ATGATTCAACTGTTAGAACAGAAACAAGCACGATTGCATCTA-TTGAAGAATATGACCAT 1775
Query 1946 CAAGTGCTTGACGTTACTGAAACTTCTTTCGAACAACAACGGAAACAACAAGAACAAGGT 2005
||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1776 CAAGTGCTTGATGTTACTGAAACTTCTTTCGAACAACAACAGAAACAACAACAACAAGGT 1835
Query 2006 ACTACTGAGCTTGAGTTGCAACCAATCCAACCTCGTAATGATTGTGTACCCAATGA-TAC 2064
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 1836 ACTACTGAGCTAGAGTTGCAACCAATCCAACCTCGTAGCGATTGTGTACCTAATGAAT-C 1894
Query 2065 TTCAAGTAGAGTCGGAACACCTCTTCTTCGACCTTGGCTCTCCATTTCTTCACCAACAAC 2124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 TTCAAGTAGAGTCGGAACACCTCTTCTTCGACCTTGGCTCTCCATTTCTTCACCAACAAC 1954
Query 2125 GACCATAGAGTTGAGATCAGAACCTATGGAAACACTCTCGAGATCGTCTTCCTTGCCAAG 2184
||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 1955 GACCATAGAGTTGAGATCAGAACCTATGGAACCACTCTCGAGATCGTTTTCATTGCCAAG 2014
Query 2185 TGAGAAGAGAGTCTGA-A-TATA-----AATAAGTTCGTAGGAGTAA---CAGTAGAAAA 2234
|||||||||||||||| | ||| ||||||||||||||||||| |||||| |||
Sbjct 2015 TGAGAAGAGAGTCTGATAATATCTCTCTAATAAGTTCGTAGGAGTAAGTTCAGTAGCAAA 2074
Query 2235 CAAGTATGTCTCGATGAACATAGAT 2259
|||| ||||||||||||||||||||
Sbjct 2075 CAAGAATGTCTCGATGAACATAGAT 2099
Score = 67.6 bits (36), Expect = 4e-10
Identities = 54/62 (87%), Gaps = 4/62 (6%)
Strand=Plus/Plus
Query 57 ACATGAAGTTATGAACTAAGTGAGACCAGAAGAACTTCTTTCGATCGATTTCTACAGTGA 116
|||||||||||||||||||||||||||| || ||| ||| | | ||||||||||||||
Sbjct 1 ACATGAAGTTATGAACTAAGTGAGACCACAATAACCTCTCT--A--GATTTCTACAGTGA 56
Query 117 TT 118
||
Sbjct 57 TT 58
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88940722075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5