BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53770.1
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495454 jgi|Araly1|495454|fgenesh2_kg.8__1270__AT5G53770.1 2595 0.0
> Ahg495454 jgi|Araly1|495454|fgenesh2_kg.8__1270__AT5G53770.1
Length=1781
Score = 2595 bits (1405), Expect = 0.0
Identities = 1678/1803 (93%), Gaps = 45/1803 (2%)
Strand=Plus/Plus
Query 1 CCGACATAACTTTTAAGTTTTGTAGCTCCTCCTCGACGGCTTCGAAACCCTAAACCCCAA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CCGACATAACTTTTAAGTTTTGTAGCTCCTCCCCGACGGCTTCGAAACCCTAAACCCCAA 60
Query 61 AGTTTAAGCTGCCGTCAATGGAGGACTCCGATGCTAAAACGGAAGCTCCTGCTTTCGTAT 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 AGTTTAAGCTGCCGTCAATGGAGGACTCCGATGCTAAAACGGAAGCTCCAGCTTTCGTAT 120
Query 121 ACGATACTCTTCCTCCACTTTCATTCTCAGATTCGAATCAATCTCCACCACCAACTCATG 180
|||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 121 ACGATACTCTTCCTCCACTTTCTTTCTCAGATTCGAACCAATCT---CCACCAACTCATG 177
Query 181 AAGAATCACACCAATACTCTGTTTTCCGCAAAGAGATTTCAGATTTTC-CCGACGACACA 239
| ||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||| ||
Sbjct 178 ACGAATCTCACCAATACTCTGTTTTCCGCAAAGAGATTTCAGA-TTTCACCGTCGATACC 236
Query 240 ACGCCGGTGGAATCAGCTACGGTGGATTTCTTCTCACTCGATGTAGAAGGTGAGACGACT 299
||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||
Sbjct 237 ACGCCGGTGGAATCAGCTACGGTGGTTTTCTTCTCACTCGATGTTGATTGTGGGACGACT 296
Query 300 GAGAACGGCGTCGAACCTGTAACGCCGGTGGTTGT-G-G-CGTCgaagaagaagagtaag 356
||||||||||||||||||||||| |||||||| || | | ||||||||||||||||||||
Sbjct 297 GAGAACGGCGTCGAACCTGTAACACCGGTGGTAGTGGCGTCGTCGAAGAAGAAGAGTAAG 356
Query 357 aagaggaagaaagatgaagaaCCTAGATTGGAGAGTAATTGGTTTAGTGAGAATAGTTTC 416
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 AAGAGGAAGAAAGATGAAGAACCCAGATTGGAGAGTAATTGGTTTAGTGAGAATAGTTTC 416
Query 417 TCTAAGATTCCAATGCTTCAATTGCATAAAGAAATAGTAGATTTCTGTGATTTTCTGTTA 476
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCTAAGATCCCAATGCTTCAATTGCATAAAGAAATAGTAGATTTCTGTGATTTTCTGTTA 476
Query 477 CCAACACAAGCCGAGAAAGCTGAGCGTGATGCAGCAGTGGAGAGTGTTTCAAGTGTTATT 536
||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 477 CCAACACAAGCAGAAAAAGCTGAGCGTGATGCAGCAGTGGAGAGTGTCTCGAGTGTTATT 536
Query 537 AAGTATATCTGGCCGAGTTGCAAGGTTGAGGTTTTTGGGTCATACAAGACAGGGCTTTAT 596
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACGTATATCTGGCCAAGTTGCAAGGTTGAGGTTTTTGGGTCATACAAGACAGGGCTTTAT 596
Query 597 CTTCCAACAAGTGATATAGATGTGGTCATTCTGGAATCAGGTCTCACTAATCCTCAGTTA 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 CTTCCAACAAGTGATATAGATGTGGTCATTCTGGAATCAGGTCTCACTAATCCTCAATTA 656
Query 657 GGTCTACGCGCACTCTCCAGGGCATTATCACAAAGGGGAATTGCGAAGAATCTTCTGGTG 716
|||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 657 GGTCTACGCGCACTCTCCAGGGCATTATCACAAAGGGGAATTGCAAAAAATCTTGTGGTG 716
Query 717 ATTGCTAAGGCTCGTGTACCAATTATCAAGTTTGTTGAGAAGAAAAGCAACATTGCGTTT 776
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 717 ATTGCTAAGGCTCGTGTACCAATTATCAAGTTTGTTGAGAAGAAAAGCAATATTGCGTTT 776
Query 777 GATCTAAGTTTTGATATGGAGAATGGACCAAAGGCAGCTGAGTTTATACAGGATGCAGTA 836
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 777 GATCTAAGTTTTGATATGGAGAATGGGCCAAAGGCAGCTGAGTTTATTCAGGATGCAGTA 836
Query 837 TCAAAGTTGCCTCCTCTACGACCATTATGTCTAATTCTGAAAGTATTTCTACAGCAGAGA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCAAAGTTGCCTCCTCTACGACCATTATGTCTAATTCTGAAAGTATTTCTACAGCAGAGA 896
Query 897 GAACTTAATGAGGTGTACAGTGGTGGAATTGGTTCATATGCACTTCTTGCAATGCTCATT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GAACTTAATGAGGTGTACAGTGGTGGAATTGGTTCATATGCACTTCTTGCAATGCTCATT 956
Query 957 GCATTTCTCAAGTACCTGAAGGATGGTCGAAGCGCACCTGAGCATAACTTGGGAGTTCTA 1016
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 GCATTTCTCAAGTACCTTAAGGATGGTCGAACCGCACCTGAGCATAACTTGGGAGTTCTA 1016
Query 1017 TTGGTTAAATTCTTTGATTTTTACGGGCGAAAATTAAACACCGCAGATGTCGGTATATCT 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 TTGGTTAAATTCTTTGATTTTTACGGGCGAAAATTAAACACCGCAGATGTCGGTGTATCT 1076
Query 1077 TGCAAAA-TGGGAGGTTCTTTCTTTTCTAAGTACAACAAAGGTTTCCTGAACAGAGCCCG 1135
||||||| ||| ||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1077 TGCAAAACTGG-AGGCTCTTTCTTTTCAAAGTACGACAAAGGTTTCCTGAACAGAGCCCG 1135
Query 1136 GCCAAGTCTCATCTCTATCGAGGATCCACAGACACCAGAGAATGACATTGGGAAGAGCTC 1195
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1136 GCCAGGTCTCATCTCTATCGAGGATCCACAGACACCAGAGAATGACATTGGCAAGAGCTC 1195
Query 1196 ATTCAACTACTTTCAGATTCGATCAGCCTTTGCAATGGCCTTGTCTACACTAACAAACAC 1255
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1196 ATTCAACTACTTTCAGATTCGATCAGCCTTTGCAATGGCCTTGTCTACTCTAACAAACAC 1255
Query 1256 AAAAGCCATCCTATCGTTAGGACCAAACCGGAGCATCCTCGGCACTATCATCAGACCAGA 1315
|||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct 1256 AAAAGCGATCCTATCTTTAGGACCAAACAGAAGCATTCTCGGCACAATCATCAGACCAGA 1315
Query 1316 CCGGGTCCTATCAGAACGCAAAGGAGG-ACAAAATGGAGATGTCACGTTCAACAGCCTTC 1374
|||| |||||||||||||||||||||| | |||| || || ||||| |||||||||||||
Sbjct 1316 CCGGATCCTATCAGAACGCAAAGGAGGGA-AAAACGGGGACGTCACTTTCAACAGCCTTC 1374
Query 1375 TTCCCGGAGCAGGAGAGCCATTACCATTGGAGAGTAACGGCAAAACCAACGGTGGGCTTT 1434
|||||||||||||||||||||||||| ||| ||| ||| ||||||||||||| || ||||
Sbjct 1375 TTCCCGGAGCAGGAGAGCCATTACCAATGGCGAGCAACAGCAAAACCAACGGCGGTCTTT 1434
Query 1435 TCTGCAACTGGGAGCTCGAAGAAGAGGAAGAAGAAGGTTCGTTCCCTAGAGGGA--A-T- 1490
||||||||||||||||||||||||| ||||||| | || |||||| ||||||| | |
Sbjct 1435 TCTGCAACTGGGAGCTCGAAGAAGACGAAGAAG--GTTT-GTTCCCAAGAGGGAGTACTA 1491
Query 1491 -----G-A--CATTACTCCAGTAGTTGATACCCCTGGTaagaaatcaaaagagtcttctc 1542
| | ||||||||| || || ||||| |||||||||||||| |||||||||||||
Sbjct 1492 CAAACGGAGACATTACTCCGGTTGTAGATACTCCTGGTAAGAAATCGAAAGAGTCTTCTC 1551
Query 1543 gaaaaaagaagaagaagagcaag-aagaataaggaggtagatgaagacgacgaggaagaa 1601
|||| |||||||||||||||| | ||||| ||||||||||||||| || || |||||
Sbjct 1552 GAAAGAAGAAGAAGAAGAGCA-GCAAGAA---GGAGGTAGATGAAGAGGA--AG-AAGAA 1604
Query 1602 ggaacgagtacgaagaagaagaagaagaaacgacggaggaaCATTGTTGGACTCACATGG 1661
||| ||||| |||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1605 GGAGCGAGTTCGAAGAAGAAGAAGAA-A--CGACGGAGGAACATAGTTGGACTCACATGG 1661
Query 1662 ACCTACTGAGAGATGTTTATTAT-A-GTTCGGTTACACTTAGAACCAGACGAA--GTTTC 1717
|| |||||||||||| || || | | ||| |||||||||| |||||||| || |||||
Sbjct 1662 ACTTACTGAGAGATGGTTCTTTTTAAGTTTGGTTACACTTGGAACCAGAAAAAAAGTTTC 1721
Query 1718 TGTTATGAGTGTAAATTATTATAATTTGGTAAAAACAGATATTTATGCTGTTGTTACAAA 1777
||||||||||||||||||| | | |||||||| ||||||||||||||||||||| |||||
Sbjct 1722 TGTTATGAGTGTAAATTAT-A-A-TTTGGTAATAACAGATATTTATGCTGTTGTAACAAA 1778
Query 1778 TTA 1780
|||
Sbjct 1779 TTA 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67381643405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5