BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53780.1 Length=1131 Score E Sequences producing significant alignments: (Bits) Value Ahg949983 jgi|Araly1|949983|scaffold_801870.1 1592 0.0 Ahg357627 jgi|Araly1|357627|fgenesh1_pg.C_scaffold_8001414 854 0.0 > Ahg949983 jgi|Araly1|949983|scaffold_801870.1 Length=1313 Score = 1592 bits (862), Expect = 0.0 Identities = 1015/1087 (93%), Gaps = 17/1087 (2%) Strand=Plus/Plus Query 52 TCTAATTCCTTCCACGAACAATCACAGGTTGAAGAAGAAGAAAGTGATCACAAGGCTGCT 111 |||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||| Sbjct 215 TCTAGTTCCTTCCACAAACAATCACAGGTT---GAAGAAGAAAGTGATCACAAGGATGCT 271 Query 112 CGTTTCTTCTCCTCATCTCC--A-AAGCAAACTCCGTATATGGTACTTGTAGGTGATAAA 168 ||||||||||| |||||||| | ||||||||||| ||||||||||||| |||||||||| Sbjct 272 CGTTTCTTCTCTTCATCTCCAAAGAAGCAAACTCCATATATGGTACTTGAAGGTGATAAA 331 Query 169 GTAGGAGAGTCTCCAGAAGCTGAAAACATCATCATGAGTTTCAAGTTGTTTGATCTGAGT 228 |||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct 332 GTAGGAGAGTCTTCTGAAGCTGAAAATATCATAATGAGTTTCAAGTTGTTTGATCTAAGT 391 Query 229 AAGGAAGAGATCATCGAAGTTATCCACAAGTCATTTCCAAAGTTGTTGTACCAAGATTCA 288 ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||| Sbjct 392 AAGGAAGAGATCATCCAAGTTATCCACAAGTCATTTCCGAAGTTGTTGTACGAAGAGTCA 451 Query 289 AGAGTCATTGGAAGCTCGCGTGGCTGGATAGCTTTTATGAGCAAACATGATGGAACCGTA 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 AGAGTCATTGGAAGCTCGCGTGGCTGGATAGCTTTTATGAGCAAACATGATGGAACCGTA 511 Query 349 CATCTAAGCGACGTGTTCAATCTCGGGTCCCTTAGAGTCATTACTCTGCCTCCTCTTCCT 408 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 512 CATCTAAGTGACGTGTTCAATCTCGGGTCCCTTAGAGTCATTACTCTGCCTCCTCTTCCT 571 Query 409 GATCCTATGTATGATCCTTCCAGAGTCATCATAAATGTCTCCTTATCCTATCCCCCAGAC 468 |||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||| Sbjct 572 GATCCTATGTATCATCCTTCCACAGCCATCATAAATGTCTCCTTATCCTATCCGCCAGAC 631 Query 469 CAAGAAGACGATTATGTAGTGTACATCAAGTTCTTATGCTCCGATATATATCT-CTGTAG 527 |||||||| ||||||| | ||||||||||||||||||||||||| |||||| | |||||| Sbjct 632 CAAGAAGATGATTATGCAATGTACATCAAGTTCTTATGCTCCGAAATATAT-TACTGTAG 690 Query 528 GCCTAATCACCACTCGCAATGGGTTGGATGCGATGGTAACGAGATCCACACGACGGCCTC 587 ||||||||||||||||||||||||| ||| ||| ||||||| |||||||| || ||||| Sbjct 691 GCCTAATCACCACTCGCAATGGGTTCTATGTGATAGTAACGAAATCCACACAACCGCCTC 750 Query 588 TGATATCGTTTATTCCCCAAGAAACCAGATGTTGTTCCTCGTGATAATGGGAGCAAGTTT 647 ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 751 TGATATCGTATATTCCCCAAGAAACCAAATGTTATTCCTCGTGATAATGGGAGCAAGTTT 810 Query 648 CTTG-TGTTCTTTTGATCTCAACATGAACAAAAAGTATACGAGGTTGCATTTGAGAAATA 706 |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 811 CTTGCT-TTCTTTTGATCTCAACATGAACAGAAAGTATACGAGGTTGCATTTGAGAAATA 869 Query 707 TCCCAATGATGCCACAGTCCGAGTGGGAGTTGTTGGCTATGTGTATCAAGATAGAGCACT 766 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 870 TCCCAAAGATGCCACAGTCCGAGTGGGAGTTGTTGGCTATGTGTATCAAGAGAGAGCACT 929 Query 767 TGGTTGAGTCCCCCGGTGGCAGAATTTTTGTTGTTAAGCAGTATGTGGAGACATACGACC 826 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 930 TGGTTGAGTCCCCTGGTGGCAGAATTTTTGTTGTTAAG---TATGTGGAGACATACGACC 986 Query 827 AAGGAGACAAGGAGGTTATATTCAACAAAACCAAGAGATTCATGGTGTTTAAGCTAAATA 886 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 987 AAGGGGACAAGGATATTATATTCAACAAAACCAAGAGATTCATGGTGTTTAAGCTAAATA 1046 Query 887 CAAAAGCAACGGATGGAGAGATTGCCGCTTATTACACTGAAGACATTGGAGATCTCTGCA 946 ||||||||| ||||||||| || ||||||| ||||||| ||||||||||||||||||||| Sbjct 1047 CAAAAGCAAAGGATGGAGAAATCGCCGCTTTTTACACTAAAGACATTGGAGATCTCTGCA 1106 Query 947 TTTTCTTTGGCAACAATGAGACATTATGTCTTGAGGCAAGCAA-TAATCCTGGACTGAAG 1005 ||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||| Sbjct 1107 TTTTCTTTGGCAACAATGAGACATTATGTCTTGAGGCAAGCAAATA-TCATGGACTTAAG 1165 Query 1006 CCTAACTATATATATTACATTGGATATGGCCTTGGTTTTTACGACAT-GAGTTCCCAAAA 1064 |||||||||||||||||| ||||||||||||| ||| |||||||||| | ||||||||| Sbjct 1166 CCTAACTATATATATTACGTTGGATATGGCCTCGGTGTTTACGACATCG-GTTCCCAAAT 1224 Query 1065 AGTACACCACTTTACATCATCTATGCCTCTAAATTGGCCTCTTTATCTCCTACCCGGTCT 1124 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1225 ATTACACCACTTTACATCATCTATGCCTCTAAATTGGCCTCTTTATCTCGTACCCAGTCT 1284 Query 1125 TATCTAA 1131 ||||||| Sbjct 1285 TATCTAA 1291 > Ahg357627 jgi|Araly1|357627|fgenesh1_pg.C_scaffold_8001414 Length=861 Score = 854 bits (462), Expect = 0.0 Identities = 544/583 (93%), Gaps = 7/583 (1%) Strand=Plus/Plus Query 85 GAAGAAGAAAGTGATCACAAGGCTGCTCGTTTCTTCTCCTCATCTCC--A-AAGCAAACT 141 |||||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||| Sbjct 40 GAAGAAGAAAGTGATCACAAGGATGCTCGTTTCTTCTCTTCATCTCCAAAGAAGCAAACT 99 Query 142 CCGTATATGGTACTTGTAGGTGATAAAGTAGGAGAGTCTCCAGAAGCTGAAAACATCATC 201 || ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||| Sbjct 100 CCATATATGGTACTTGAAGGTGATAAAGTAGGAGAGTCTTCTGAAGCTGAAAATATCATA 159 Query 202 ATGAGTTTCAAGTTGTTTGATCTGAGTAAGGAAGAGATCATCGAAGTTATCCACAAGTCA 261 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 160 ATGAGTTTCAAGTTGTTTGATCTAAGTAAGGAAGAGATCATCCAAGTTATCCACAAGTCA 219 Query 262 TTTCCAAAGTTGTTGTACCAAGATTCAAGAGTCATTGGAAGCTCGCGTGGCTGGATAGCT 321 ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 220 TTTCCGAAGTTGTTGTACGAAGAGTCAAGAGTCATTGGAAGCTCGCGTGGCTGGATAGCT 279 Query 322 TTTATGAGCAAACATGATGGAACCGTACATCTAAGCGACGTGTTCAATCTCGGGTCCCTT 381 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 280 TTTATGAGCAAACATGATGGAACCGTACATCTAAGTGACGTGTTCAATCTCGGGTCCCTT 339 Query 382 AGAGTCATTACTCTGCCTCCTCTTCCTGATCCTATGTATGATCCTTCCAGAGTCATCATA 441 ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| Sbjct 340 AGAGTCATTACTCTGCCTCCTCTTCCTGATCCTATGTATCATCCTTCCACAGCCATCATA 399 Query 442 AATGTCTCCTTATCCTATCCCCCAGACCAAGAAGACGATTATGTAGTGTACATCAAGTTC 501 |||||||||||||||||||| |||||||||||||| ||||||| | |||||||||||||| Sbjct 400 AATGTCTCCTTATCCTATCCGCCAGACCAAGAAGATGATTATGCAATGTACATCAAGTTC 459 Query 502 TTATGCTCCGATATATATCT-CTGTAGGCCTAATCACCACTCGCAATGGGTTGGATGCGA 560 ||||||||||| |||||| | ||||||||||||||||||||||||||||||| ||| || Sbjct 460 TTATGCTCCGAAATATAT-TACTGTAGGCCTAATCACCACTCGCAATGGGTTCTATGTGA 518 Query 561 TGGTAACGAGATCCACACGACGGCCTCTGATATCGTTTATTCCCCAAGAAACCAGATGTT 620 | ||||||| |||||||| || |||||||||||||| ||||||||||||||||| ||||| Sbjct 519 TAGTAACGAAATCCACACAACCGCCTCTGATATCGTATATTCCCCAAGAAACCAAATGTT 578 Query 621 GTTCCTCGTGATAATGGGAGCAAGTTTCTTG-TGTTCTTTTGA 662 |||||||||||||||||||||||||||||| | ||||||||| Sbjct 579 ATTCCTCGTGATAATGGGAGCAAGTTTCTTGCT-TTCTTTTGA 620 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42163946202 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5