BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53780.1
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949983 jgi|Araly1|949983|scaffold_801870.1 1592 0.0
Ahg357627 jgi|Araly1|357627|fgenesh1_pg.C_scaffold_8001414 854 0.0
> Ahg949983 jgi|Araly1|949983|scaffold_801870.1
Length=1313
Score = 1592 bits (862), Expect = 0.0
Identities = 1015/1087 (93%), Gaps = 17/1087 (2%)
Strand=Plus/Plus
Query 52 TCTAATTCCTTCCACGAACAATCACAGGTTGAAGAAGAAGAAAGTGATCACAAGGCTGCT 111
|||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||||
Sbjct 215 TCTAGTTCCTTCCACAAACAATCACAGGTT---GAAGAAGAAAGTGATCACAAGGATGCT 271
Query 112 CGTTTCTTCTCCTCATCTCC--A-AAGCAAACTCCGTATATGGTACTTGTAGGTGATAAA 168
||||||||||| |||||||| | ||||||||||| ||||||||||||| ||||||||||
Sbjct 272 CGTTTCTTCTCTTCATCTCCAAAGAAGCAAACTCCATATATGGTACTTGAAGGTGATAAA 331
Query 169 GTAGGAGAGTCTCCAGAAGCTGAAAACATCATCATGAGTTTCAAGTTGTTTGATCTGAGT 228
|||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 332 GTAGGAGAGTCTTCTGAAGCTGAAAATATCATAATGAGTTTCAAGTTGTTTGATCTAAGT 391
Query 229 AAGGAAGAGATCATCGAAGTTATCCACAAGTCATTTCCAAAGTTGTTGTACCAAGATTCA 288
||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 392 AAGGAAGAGATCATCCAAGTTATCCACAAGTCATTTCCGAAGTTGTTGTACGAAGAGTCA 451
Query 289 AGAGTCATTGGAAGCTCGCGTGGCTGGATAGCTTTTATGAGCAAACATGATGGAACCGTA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 AGAGTCATTGGAAGCTCGCGTGGCTGGATAGCTTTTATGAGCAAACATGATGGAACCGTA 511
Query 349 CATCTAAGCGACGTGTTCAATCTCGGGTCCCTTAGAGTCATTACTCTGCCTCCTCTTCCT 408
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CATCTAAGTGACGTGTTCAATCTCGGGTCCCTTAGAGTCATTACTCTGCCTCCTCTTCCT 571
Query 409 GATCCTATGTATGATCCTTCCAGAGTCATCATAAATGTCTCCTTATCCTATCCCCCAGAC 468
|||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 572 GATCCTATGTATCATCCTTCCACAGCCATCATAAATGTCTCCTTATCCTATCCGCCAGAC 631
Query 469 CAAGAAGACGATTATGTAGTGTACATCAAGTTCTTATGCTCCGATATATATCT-CTGTAG 527
|||||||| ||||||| | ||||||||||||||||||||||||| |||||| | ||||||
Sbjct 632 CAAGAAGATGATTATGCAATGTACATCAAGTTCTTATGCTCCGAAATATAT-TACTGTAG 690
Query 528 GCCTAATCACCACTCGCAATGGGTTGGATGCGATGGTAACGAGATCCACACGACGGCCTC 587
||||||||||||||||||||||||| ||| ||| ||||||| |||||||| || |||||
Sbjct 691 GCCTAATCACCACTCGCAATGGGTTCTATGTGATAGTAACGAAATCCACACAACCGCCTC 750
Query 588 TGATATCGTTTATTCCCCAAGAAACCAGATGTTGTTCCTCGTGATAATGGGAGCAAGTTT 647
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 751 TGATATCGTATATTCCCCAAGAAACCAAATGTTATTCCTCGTGATAATGGGAGCAAGTTT 810
Query 648 CTTG-TGTTCTTTTGATCTCAACATGAACAAAAAGTATACGAGGTTGCATTTGAGAAATA 706
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 811 CTTGCT-TTCTTTTGATCTCAACATGAACAGAAAGTATACGAGGTTGCATTTGAGAAATA 869
Query 707 TCCCAATGATGCCACAGTCCGAGTGGGAGTTGTTGGCTATGTGTATCAAGATAGAGCACT 766
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 870 TCCCAAAGATGCCACAGTCCGAGTGGGAGTTGTTGGCTATGTGTATCAAGAGAGAGCACT 929
Query 767 TGGTTGAGTCCCCCGGTGGCAGAATTTTTGTTGTTAAGCAGTATGTGGAGACATACGACC 826
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 930 TGGTTGAGTCCCCTGGTGGCAGAATTTTTGTTGTTAAG---TATGTGGAGACATACGACC 986
Query 827 AAGGAGACAAGGAGGTTATATTCAACAAAACCAAGAGATTCATGGTGTTTAAGCTAAATA 886
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 AAGGGGACAAGGATATTATATTCAACAAAACCAAGAGATTCATGGTGTTTAAGCTAAATA 1046
Query 887 CAAAAGCAACGGATGGAGAGATTGCCGCTTATTACACTGAAGACATTGGAGATCTCTGCA 946
||||||||| ||||||||| || ||||||| ||||||| |||||||||||||||||||||
Sbjct 1047 CAAAAGCAAAGGATGGAGAAATCGCCGCTTTTTACACTAAAGACATTGGAGATCTCTGCA 1106
Query 947 TTTTCTTTGGCAACAATGAGACATTATGTCTTGAGGCAAGCAA-TAATCCTGGACTGAAG 1005
||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct 1107 TTTTCTTTGGCAACAATGAGACATTATGTCTTGAGGCAAGCAAATA-TCATGGACTTAAG 1165
Query 1006 CCTAACTATATATATTACATTGGATATGGCCTTGGTTTTTACGACAT-GAGTTCCCAAAA 1064
|||||||||||||||||| ||||||||||||| ||| |||||||||| | |||||||||
Sbjct 1166 CCTAACTATATATATTACGTTGGATATGGCCTCGGTGTTTACGACATCG-GTTCCCAAAT 1224
Query 1065 AGTACACCACTTTACATCATCTATGCCTCTAAATTGGCCTCTTTATCTCCTACCCGGTCT 1124
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1225 ATTACACCACTTTACATCATCTATGCCTCTAAATTGGCCTCTTTATCTCGTACCCAGTCT 1284
Query 1125 TATCTAA 1131
|||||||
Sbjct 1285 TATCTAA 1291
> Ahg357627 jgi|Araly1|357627|fgenesh1_pg.C_scaffold_8001414
Length=861
Score = 854 bits (462), Expect = 0.0
Identities = 544/583 (93%), Gaps = 7/583 (1%)
Strand=Plus/Plus
Query 85 GAAGAAGAAAGTGATCACAAGGCTGCTCGTTTCTTCTCCTCATCTCC--A-AAGCAAACT 141
|||||||||||||||||||||| ||||||||||||||| |||||||| | |||||||||
Sbjct 40 GAAGAAGAAAGTGATCACAAGGATGCTCGTTTCTTCTCTTCATCTCCAAAGAAGCAAACT 99
Query 142 CCGTATATGGTACTTGTAGGTGATAAAGTAGGAGAGTCTCCAGAAGCTGAAAACATCATC 201
|| ||||||||||||| |||||||||||||||||||||| | ||||||||||| |||||
Sbjct 100 CCATATATGGTACTTGAAGGTGATAAAGTAGGAGAGTCTTCTGAAGCTGAAAATATCATA 159
Query 202 ATGAGTTTCAAGTTGTTTGATCTGAGTAAGGAAGAGATCATCGAAGTTATCCACAAGTCA 261
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 160 ATGAGTTTCAAGTTGTTTGATCTAAGTAAGGAAGAGATCATCCAAGTTATCCACAAGTCA 219
Query 262 TTTCCAAAGTTGTTGTACCAAGATTCAAGAGTCATTGGAAGCTCGCGTGGCTGGATAGCT 321
||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 220 TTTCCGAAGTTGTTGTACGAAGAGTCAAGAGTCATTGGAAGCTCGCGTGGCTGGATAGCT 279
Query 322 TTTATGAGCAAACATGATGGAACCGTACATCTAAGCGACGTGTTCAATCTCGGGTCCCTT 381
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 280 TTTATGAGCAAACATGATGGAACCGTACATCTAAGTGACGTGTTCAATCTCGGGTCCCTT 339
Query 382 AGAGTCATTACTCTGCCTCCTCTTCCTGATCCTATGTATGATCCTTCCAGAGTCATCATA 441
||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 340 AGAGTCATTACTCTGCCTCCTCTTCCTGATCCTATGTATCATCCTTCCACAGCCATCATA 399
Query 442 AATGTCTCCTTATCCTATCCCCCAGACCAAGAAGACGATTATGTAGTGTACATCAAGTTC 501
|||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||
Sbjct 400 AATGTCTCCTTATCCTATCCGCCAGACCAAGAAGATGATTATGCAATGTACATCAAGTTC 459
Query 502 TTATGCTCCGATATATATCT-CTGTAGGCCTAATCACCACTCGCAATGGGTTGGATGCGA 560
||||||||||| |||||| | ||||||||||||||||||||||||||||||| ||| ||
Sbjct 460 TTATGCTCCGAAATATAT-TACTGTAGGCCTAATCACCACTCGCAATGGGTTCTATGTGA 518
Query 561 TGGTAACGAGATCCACACGACGGCCTCTGATATCGTTTATTCCCCAAGAAACCAGATGTT 620
| ||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct 519 TAGTAACGAAATCCACACAACCGCCTCTGATATCGTATATTCCCCAAGAAACCAAATGTT 578
Query 621 GTTCCTCGTGATAATGGGAGCAAGTTTCTTG-TGTTCTTTTGA 662
|||||||||||||||||||||||||||||| | |||||||||
Sbjct 579 ATTCCTCGTGATAATGGGAGCAAGTTTCTTGCT-TTCTTTTGA 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42163946202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5