BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53790.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917033 jgi|Araly1|917033|Al_scaffold_0008_1784 1480 0.0
Ahg357629 jgi|Araly1|357629|fgenesh1_pg.C_scaffold_8001416 1314 0.0
Ahg949989 jgi|Araly1|949989|scaffold_801876.1 900 0.0
Ahg949992 jgi|Araly1|949992|scaffold_801879.1 688 0.0
> Ahg917033 jgi|Araly1|917033|Al_scaffold_0008_1784
Length=1101
Score = 1480 bits (801), Expect = 0.0
Identities = 1013/1113 (91%), Gaps = 24/1113 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTTTCGGAT-TAGTTGCAAAACATTCTGTAGAAGAAAGTGACGCGGTCCG 59
||||||||||||||||| | ||||||||||||| |||||||||||| ||||| |||||||
Sbjct 1 ATGTCTCTGCTTTTCGG-TCTAGTTGCAAAACACTCTGTAGAAGAAGGTGACACGGTCCG 59
Query 60 TTTCTGCTCATACCCACGGCAAACCCCATACATGTTGTTCAACTGCAGTTTGGGTAATGT 119
|||||||||||||||||| |||||||||||| ||||| ||||||||||||| || ||||
Sbjct 60 TTTCTGCTCATACCCACGACAAACCCCATACTTGTTGGTCAACTGCAGTTT-GG--ATGT 116
Query 120 AGACAGATATTCAAATATAACTATAAGTTATAATATATTTAATCCAAGGAATGAAAAAAT 179
||||| ||||||||||||| |||||||||| |||||||| |||||||||||||||||| |
Sbjct 117 AGACAAATATTCAAATATATCTATAAGTTACAATATATTCAATCCAAGGAATGAAAAACT 176
Query 180 CATCAAGATCACTGATAAAGTTTTTGTAAAAAGTTTACCGGAT-CCCGAA-CAATTCGTC 237
||||||||||||||||||| ||||| ||||||||||||| | | ||||| | |||| ||
Sbjct 177 CATCAAGATCACTGATAAAATTTTTCTAAAAAGTTTACC-GTTGTCCGAAGC-ATTCATC 234
Query 238 TTAC-TTGGAACCTCACGAAGCTGGGCAGCTTTTACGCGTATACATGATACAATT--ATA 294
|| | ||||||||||||| |||||||||||||||| || | | || | || || | |
Sbjct 235 TT-CTTTGGAACCTCACGTAGCTGGGCAGCTTTTATGCACA-ATAT-CTGCACTTACACA 291
Query 295 TTTCTCA-CTGACGTGTTTAATCCTTGGTCCTCCGAATCATCCACCAGAACCATTACTCT 353
| |||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 292 CTACTCAGC-GACGTGTTTAATCCTTGGTCCTCAGAATCATCCACCAGAACCATTGCTCT 350
Query 354 GCCTCCATTGGTATCTAATGGCATAAAGGCCTCCGTTTCATTGTCCACTCCTTCTCCAGA 413
|| ||||||||||| ||| ||| ||| |||||| ||||||||||||||||||| ||| ||
Sbjct 351 GCTTCCATTGGTATTTAAAGGCGTAACGGCCTCAGTTTCATTGTCCACTCCTTTTCCCGA 410
Query 414 CGACGACAATGATTATATAGTTAGTGTCAGCTTCTTTAGATCTAAACTTTATTATTGTAT 473
| | ||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct 411 CCAAGACAATGATTATATAGTTAGTGTCATCTTCTTTGGATCTAAACTTTATTACTGTAT 470
Query 474 GCCTAATCGAGATTCAGAGTGGACTAGTACTAACATTCCATTTTCTTGCGATTTCAACTC 533
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 471 GCCTAATCGAGATTCAGAGTGGACTAGTATTAACATTCCATTTTCTTGCGATTTCGACTC 530
Query 534 ACAAGTCGTTTACTCTCGAAAACG-CCAAATGTTTTACCTCCTCACAACTGGATGTGCCT 592
||||||||||| ||||| ||| | ||||||||||||||||||||| |||||||||||||
Sbjct 531 ACAAGTCGTTTTTTCTCGGAAA-GACCAAATGTTTTACCTCCTCACTACTGGATGTGCCT 589
Query 593 ATATAGCTGCCTTGGATCTCAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTC 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATATAGCTGCCTTGGATCTCAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTC 649
Query 653 AGAACTTCCCTTTGATACCACAACACGAGTGGGAGATATTGGCTTCATGTTTACGGAGTG 712
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 650 AGAACTTCCCTTTGATACCACAACACGAGTGGGAGATATTGGCTTCATGTTCACGGAGTG 709
Query 713 ACTATATTGCTGAGTCGTCTTCTGGCGAACGTTTCATTGTTCAATGGTATTTGACGTATG 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 710 ACTATATTGCTGAGTCGTCTTCTGGCGAACGTTTCATTGTTCAATGGTATTTGATGTATG 769
Query 773 TGGTGGAACCATGGGGCAATGGGAACATAACTAAAGTATTTAGAGAAACCAAG-AGATTC 831
||| | | |||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 770 TGGAGT--C-ATGGTGCAATGGGAACATAACTAAAGTATTTAGAGAAACCAAGCAG-TTC 825
Query 832 ATGGTCTTCAAGGAAGAAGAAGAGCATAAATTCCAAAGAAGGAAAATGATTGCAAACTAC 891
||||| |||| |||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 826 ATGGTGTTCAGGGAAGAAGAAGAGCATAAATTCCAAAGAAGTAAAATGATCACTAACTAC 885
Query 892 ACAGAAAATATTGGAGATCTTTGCATTTTCATTGGGAGGAATGAGACATTTTGTTTGGAA 951
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 886 ACAGAAAATATTGGAGATCTTTGCATTTTCATTGGGAACAATGAGACATTTTGTTTAGAG 945
Query 952 GCAAGCAAGTATCCGGGACTCAGGCGTAACTCTATATATTATACCGGTCATGGCTTTGGT 1011
|||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 946 GCAAGCAAGTATCCAGGACTCAGGCCAAACTCTATATATTATGTTGGTCATGGCTTTGGT 1005
Query 1012 GTTTACGATATCCGTAAGAAAAGCTTCCGTGAATATGACTCAAACTTAACAAAGGAATCC 1071
|||||||||||| ||||||||||| ||||||||||||| || ||||||||||| |||||
Sbjct 1006 GTTTACGATATCAGTAAGAAAAGCGTCCGTGAATATGAATCGGACTTAACAAAGAAATCC 1065
Query 1072 AAATTATCATCGATTTCTTTTATAGCAAAGTAT 1104
||||||||||||| |||||||||||||||||||
Sbjct 1066 AAATTATCATCGACTTCTTTTATAGCAAAGTAT 1098
> Ahg357629 jgi|Araly1|357629|fgenesh1_pg.C_scaffold_8001416
Length=1104
Score = 1314 bits (711), Expect = 0.0
Identities = 945/1057 (89%), Gaps = 20/1057 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTTTCGGATTAGTTGCAAAACA-TTCTGTAGAAGAAAGTGACGCGGTCCG 59
||||||||||||||||| ||||||||||||| || ||| |||||| ||||| || |||
Sbjct 1 ATGTCTCTGCTTTTCGGCCTAGTTGCAAAACACTT-TGTTGAAGAAGGTGACAAGGCCCG 59
Query 60 TTTCTGCTCATACCCACGGCAAACCCCATACATGTTGTTCAACTGCAGTTTGGGTAATGT 119
||| |||||||||||||| |||||||| ||||||||| |||||| |||||| | |||
Sbjct 60 TTTTTGCTCATACCCACGACAAACCCCGTACATGTTGGTCAACTACAGTTT---TGATGA 116
Query 120 AGACAGATATTCAAATATAACTATAAGTTA-TAATATATTTAATCCAAGGAATGAAAAAA 178
||||| ||||| ||||||| ||| |||||| | | ||||||||||||||||||||||||
Sbjct 117 AGACAAATATTTAAATATATCTACAAGTTACT-GTTTATTTAATCCAAGGAATGAAAAAA 175
Query 179 TCATCAAGATCACTGATAAAGTTTTTGTAAAAAGTTTACCGGAT-CCCGAACAATTCGTC 237
|||||||||||| ||||||| |||| |||||||| |||| | | ||||| |||| ||
Sbjct 176 TCATCAAGATCATTGATAAAAATTTTCTAAAAAGTCTACC-GTTGTCCGAAGGATTCATC 234
Query 238 TTACTTGGAACCTCACGAAGCTGGGCAGCTTTTACGCGTATACATGATACAATTATATTT 297
|| |||||||||||||| ||||||||| ||||| | |||| |||||| |||||||||||
Sbjct 235 TTCCTTGGAACCTCACGTGGCTGGGCAGTTTTTAAGTGTATGCATGATTCAATTATATTT 294
Query 298 CTCA-CTGACGTGTTTAATCCTTGGTCCTCCGAATCATCCACCAGAACCATTACT-CTGC 355
|||| | |||||||||||||||||||| || ||||||||||| ||||||||| | ||||
Sbjct 295 CTCAGC-GACGTGTTTAATCCTTGGTCGTCAGAATCATCCACTAGAACCATT-GTGCTGC 352
Query 356 CTCCATTGGTATCTAATGGCATAAAGGCCTCCGTTTCATTGTCCACTCCTTCTCCAGACG 415
|||||||||||| ||||||||| || ||| | ||||||||||||||||| ||| |||
Sbjct 353 CTCCATTGGTATTTAATGGCATGAATGCCAAAGCTTCATTGTCCACTCCTTTTCCCGACC 412
Query 416 ACGACAATGATTATATAGTTAGTGTCAGCTTCTTTAGATCTAAACTTTATTATTGTATGC 475
| ||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||
Sbjct 413 AGGACAATGATTATATAGTGAGTGTCACCTTCTTTGGATCTAAACTTTATTACTGTATGC 472
Query 476 CTAATCGAGATTCAGAGTGGACTAGTACTAACATTCCATTTTCTTGCGATTTCAACTCAC 535
||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 473 CTACTCGAGATTCAGAGTGGACTAGTATTAACATTCCATTTTCTTGCGATTTCGACTCAC 532
Query 536 AAGTCGTTTACTCTCGAAAACG-CCAAATGTTTTACCTCCTCACAACTGGATGTGCCTAT 594
|||||||||| ||||| ||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 533 AAGTCGTTTATTCTCGGAAA-GACCAAATGTTTTACCTCCTCACTACTGGATGTGCCTAT 591
Query 595 ATAGCTGCCTTGGATCTCAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTCAG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ATAGCTGCCTTGGATCTCAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTCAG 651
Query 655 AACTTCCCTTTGATACCACAACACGAGTGGGAGATATTGGCTTCATGTTTACGGAGTGAC 714
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 652 AACTTCCCTTTGATACCACAACACGAGTGGGAGATATTGGCTTCATGTTCACGAAGTGAC 711
Query 715 TATATTGCTGAGTCGTCTTCTGGCGAACGTTTCATTGTTCAATGGTATTTGACGTATGTG 774
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 712 TATATTGCTGAGTCGTCTTCTGGCGAACGTTTCATTGTTCAATGGTATTTAACGTATGTG 771
Query 775 GTGGAACCATGGGGCAATGGGAACATAACTAAAGTATTTAGAGAAACCAAGAGATTCATG 834
| | | |||||||||||||||||| |||| |||| ||||| ||||||| ||||||||
Sbjct 772 GAGT--C-ATGGGGCAATGGGAACATCACTAGAGTAGTTAGAAAAACCAACCGATTCATG 828
Query 835 GTCTTCAAGGAAGAAGAAGAGCATAAATTCCAAAGAAGGAAAATGATTGCAAACTACACA 894
|| |||| ||||||||||||||||||| |||||||||| |||||||| || |||||||||
Sbjct 829 GTGTTCAGGGAAGAAGAAGAGCATAAACTCCAAAGAAGTAAAATGATCGCTAACTACACA 888
Query 895 GAAAATATTGGAGATCTTTGCATTTTCATTGGG-AGGAATGAGACATTTTGTTTGGAAGC 953
||||||||||||||||||||||||||||||||| || ||||| ||||||||||| || ||
Sbjct 889 GAAAATATTGGAGATCTTTGCATTTTCATTGGGGAG-AATGATACATTTTGTTTAGAGGC 947
Query 954 AAGCAAGTATCCGGGACTCAGGCGTAACTCTATATATTATACCGGTCATGGCTTTGGTGT 1013
||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 948 AAGCAAGTATCCGGGACTCAGACCAAACTCTATATATTATGTTGGTCATGGCTTTGGTGT 1007
Query 1014 TTACGATATCCGTAAGAAAAGCTTCCGTGAATATGAC 1050
|||||||||| |||||||||| ||||||||||||||
Sbjct 1008 TTACGATATCAGTAAGAAAAGAGTCCGTGAATATGAC 1044
> Ahg949989 jgi|Araly1|949989|scaffold_801876.1
Length=1079
Score = 900 bits (487), Expect = 0.0
Identities = 577/620 (93%), Gaps = 7/620 (1%)
Strand=Plus/Plus
Query 433 GTTAGTGTCAGCTTCTTTAGATCTAAACTTTATTATTGTATGCCTAATCGAGATTCAGAG 492
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 339 GTTAGTGTCACCTTCTTTAGATCTAAACTTTATTACTGTATGCCTAATCGAGATTCAGAG 398
Query 493 TGGACTAGTACTAACATTCCATTTTCTTGCGATTTCAACTCACAAGTCGTTTACTCTCGA 552
|||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 399 TGGACTAGTATTAACATTCCATTTTCTTGCGATTTCGACTCACAAGTCGTTTATTCTCGG 458
Query 553 AAACG-CCAAATGTTTTACCTCCTCACAACTGGATGTGCCTATATAGCTGCCTTGGATCT 611
||| | |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 459 AAA-GACCAAATGTTTTATCTCCTCACTACTGGATGTCCCTATATAGCTGCCTTGGATCT 517
Query 612 CAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTCAGAACTTCCCTTTGATACC 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 518 CAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTCAGAACTTCCCTTTGGTACC 577
Query 672 ACAACACGAGTGGGAGATATTGGCTTCATGTTTACGGAGTGACTATATTGCTGAGTCGTC 731
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 578 ACAACACGAGTGGGAGATATTGGCTTCATGTTCACGGAGTGACTATATTGCTGAGTCGTC 637
Query 732 TTCTGGCGAACGTTTCATTGTTCAATGGTATTTGACGTATGTGGTGGAACCATGGGGCAA 791
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 638 TTCTGGCGAACGTTTCATTGTTCAATGGTATTTGACGTATGTGGAGT--C-ATGGGGCAA 694
Query 792 TGGGAACATAACTAAAGTATTTAGAGAAACCAAG-AGATTCATGGTCTTCAAGGAAGAAG 850
||||||||||||||||||| ||||| |||||||| || |||||||| |||| ||||||||
Sbjct 695 TGGGAACATAACTAAAGTACTTAGAAAAACCAAGCAG-TTCATGGTGTTCAGGGAAGAAG 753
Query 851 AAGAGCATAAATTCCAAAGAAGGAAAATGATTGCAAACTACACAGAAAATATTGGAGATC 910
||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 754 GAGAGCATAAATTCCAAAGAAGTAAAATGATCACTAACTACACAGAAAATATTGGAGATC 813
Query 911 TTTGCATTTTCATTGGGAGGAATGAGACATTTTGTTTGGAAGCAAGCAAGTATCCGGGAC 970
||||||||||||||| || ||||||||||||||||| || |||||||||||| | ||||
Sbjct 814 TTTGCATTTTCATTGAGAACAATGAGACATTTTGTTTAGAGGCAAGCAAGTATTCAGGAC 873
Query 971 TCAGGCGTAACTCTATATATTATACCGGTCATGGCTTTGGTGTTTACGATATCCGTAAGA 1030
|||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 874 TCAGGCCAAACTCTATATATTATGTTGGTCATGGCTTTGGTGTTTACGATATCAGTAAGA 933
Query 1031 AAAGCTTCCGTGAATATGAC 1050
||||| ||||||||||||||
Sbjct 934 AAAGCGTCCGTGAATATGAC 953
> Ahg949992 jgi|Araly1|949992|scaffold_801879.1
Length=1157
Score = 688 bits (372), Expect = 0.0
Identities = 856/1082 (79%), Gaps = 64/1082 (6%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTTTCGGATTAGTTGCAAAACATTCTGTAGAAGAAAGTGACGCGGTC-CG 59
||||||||||||||||| ||||||||||||||| ||| |||||| ||||| | | ||
Sbjct 22 ATGTCTCTGCTTTTCGGCCTAGTTGCAAAACATTATGTTGAAGAAGGTGACAC-AACACG 80
Query 60 TTTCTGCTCATACCCACGGCAAACCCCATACATGTTGTTCAACTGCAG-TTTG-----G- 112
||| |||||||| |||| |||||||| ||||||||| |||||| || |||| |
Sbjct 81 TTTATGCTCATATCCACTACAAACCCCGTACATGTTGGTCAACTATAGTTTTGAACAAGA 140
Query 113 -GTAATGTAGACA-G-ATATTCAAATATAACTATAAGTTATAATATATTTAATCCAAGGA 169
| ||| || | | | | | |||||| | ||||||| ||| |||| |||| || ||
Sbjct 141 CG-AATCTACAAATGAAGAAGAAAATATGTTTGTAAGTTACAATTTATTCAATCTAA-GA 198
Query 170 A-TGAAAAAATCATCAAGATCACTGATAAAG-TTTTTGTAAAAAGT-TTACCGGATCCCG 226
| |||||||||||||||||| || | ||| ||| |||||| || | | ||
Sbjct 199 AGTGAAAAAATCATCAAGATTACAG-GCAAGAAATTT-CCAAAAGTGTT----G-TACC- 250
Query 227 AACA-ATTCGTCTTACTTGGAACCTCACGAAGCTGGGCAGCTTTTACGCGTAT-ACATGA 284
|| | || || | ||||||||||| || ||||||||| ||||| | |||| | ||||
Sbjct 251 AA-AGGTTTATCCTCCTTGGAACCTCCCGTGGCTGGGCAGTTTTTATGGGTATGA-ATGA 308
Query 285 TACAATTATATTTCTCA-CTGACGTGTTTAATCCTTGGTCCTCCGAA-TCATCCACCAGA 342
| | | |||| ||||| | ||| | |||||||||||||||| | || |||||| ||| |
Sbjct 309 TTCCACCATATATCTCAGC-GACATATTTAATCCTTGGTCCT-CAAAGTCATCCCCCAAA 366
Query 343 ACCATTACTCTGCCTCCATT-G-GTAT-CTAA--TGGCATAAAGGCC-T--CCGTTTCAT 394
|||||| |||| |||||||| | || | |||| | | | || | || | ||||||||
Sbjct 367 ACCATTTCTCTACCTCCATTGGCGTTTCCTAATTTTG-A-AATGACCATAAACGTTTCAT 424
Query 395 TGTCCACTCCTTCTCCAGACGACGACAATGATTATATAGTTAGTGTCAGCTTCTTTAGAT 454
|||| ||||||| ||| ||| |||||||| | | |||||| ||| | | ||||| | |||
Sbjct 425 TGTCTACTCCTTTTCCCGACCACGACAATAACTCTATAGTGAGTATTACCTTCTGTGGAT 484
Query 455 CTAAACTTTA-TTATTGTATGCCTAATCGAGATTCAGAGTGGACTAGTACTAACATTCCA 513
|||||| ||| ||||||||||||||||||||||| ||||||||| | | ||||||||||
Sbjct 485 CTAAAC-TTAGTTATTGTATGCCTAATCGAGATTTAGAGTGGACCACCATTAACATTCCA 543
Query 514 TTTTCTTGCGATTTCAACTCACAAGTCGTTTACTCTCGAAAACG-CCAAATGTTTTACCT 572
|| || ||||| || ||||||| || ||||| ||||| ||| | ||||||||| |||||
Sbjct 544 TTCTCCAGCGATATCGACTCACATGTTGTTTATTCTCGGAAA-GACCAAATGTTCTACCT 602
Query 573 CCTCACAACTGGATGTGCCTATATAGCTGCCTTGGATCTCAAAAACAATAAGGACCCTAC 632
||| | || ||||||||||| || | | |||||||||| |||||||||||| |||||||
Sbjct 603 CCTTAGTACAGGATGTGCCTACATGGTTACCTTGGATCTTAAAAACAATAAGAACCCTAC 662
Query 633 CTTCCTTCAAATACAGTTTCAGAACTTCCCTTTGATACCACAACACGAGTGGGAGATATT 692
||| | || |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 663 ATTCATGCAGTTACAGTTTGAGAATTTCCCTTTGATACCACAACACGAGTGGGAGATATT 722
Query 693 GGCTTCATGTTTACGGAGTGACTATATTGCTG-AGTCGTCTTCTGGCGAACGTTTCATTG 751
||||||||| ||||||||||||||| | || || | |||||||||||||||||||||
Sbjct 723 ATCTTCATGTTCACGGAGTGACTATAT-GATGGAGACTTCTTCTGGCGAACGTTTCATTA 781
Query 752 TTCAATGGTATTTGACGTATGTGGTGGAACCATGGGGCAATGGGAACATAACTAAAGTAT 811
|||| |||||| |||||||||||| | ||| | |||||||||||| ||||||| |||
Sbjct 782 TTCATTGGTATGTGACGTATGTGGAG---CCAACGCGCAATGGGAACAGAACTAAAATAT 838
Query 812 TTAGAGAAACCAAGAGATTCATGGTCTTCAAGGA-AGAAGAAGA-GCATAAAT-TCCAAA 868
| || |||| ||| |||||||||| || | ||| |||| |||| | |||||| | |||
Sbjct 839 ATGGAAAAACTAAGCGATTCATGGTGTTTA-GGATAGAAAAAGATG-ATAAATAT--AAA 894
Query 869 G-AAGGAA-AATGATTGCAAACTACACAGAAAATATTGGAGATCTTTGCATTTTCATTGG 926
| ||| || |||||| || | ||||||||| |||||||||||||||||||||||||||||
Sbjct 895 GGAAG-AAGAATGATCGCTAGCTACACAGACAATATTGGAGATCTTTGCATTTTCATTGG 953
Query 927 -GAGGAATGAGACATTTTGTTTGGAAGCAAGCAAGTATCCGGGACTCAGGCGTAACTCTA 985
||| ||||||| ||| ||||| || ||| |||||||||| ||||||| || ||| || |
Sbjct 954 CGAG-AATGAGATATTCTGTTTAGAGGCATGCAAGTATCCTGGACTCAAGCCTAATTCGA 1012
Query 986 TATATTATACCGGTCATGGCTTTGGTGTTTACGATATCCGTAAGAAAAGCTTCCGTGAAT 1045
|||||||| || ||||||||||||| ||||||||| |||| | |||| ||| ||||
Sbjct 1013 TATATTATGTTAGTTATGGCTTTGGTGTGTACGATATCAGTAATAGAAGCGCCCGCGAAT 1072
Query 1046 AT 1047
||
Sbjct 1073 AT 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5