BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53800.1
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331729 jgi|Araly1|331729|fgenesh1_pm.C_scaffold_8001072 1487 0.0
Ahg948430 jgi|Araly1|948430|scaffold_800317.1 614 6e-175
> Ahg331729 jgi|Araly1|331729|fgenesh1_pm.C_scaffold_8001072
Length=1032
Score = 1487 bits (805), Expect = 0.0
Identities = 985/1064 (93%), Gaps = 44/1064 (4%)
Strand=Plus/Plus
Query 46 ATGGGAAGTGACCGCGACGGTGCTCCGCCGGAGAACACAAAACGAGAGGTTGAAGATAGA 105
||||||||||||| ||||||| |||||||||||||||| ||||| || || |||||||||
Sbjct 1 ATGGGAAGTGACCACGACGGTTCTCCGCCGGAGAACACGAAACGCGAAGTAGAAGATAGA 60
Query 106 GATATCAGAAGAAAATCATCCCGGGAGAAACCGAGTGGTTCTGGAAAGGATTCCGGCGAA 165
|| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 61 GAAATCAGAAGAAAATCATCCCGGGAGAAACCTACCGGTGCTGGAAAGGATTCCGGCGAA 120
Query 166 GAGAAAGATGTGAGTCGCCGCCGTGAATCGAAGAGGAGAACAAAAGACGGCAACGATTCC 225
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 GAGAAAGATGTGAGTCGCCGCCGTGAATCGAAGAAGAGAACAAAAGACGGCAACGATTCC 180
Query 226 GGCTCTGAATCTGGTTTGGAAAGTGG-A---AG-C-GAATC-GG--A-GAAGGAAGAGAG 275
|||||||||||||||||||||||||| | || | ||||| || | ||| ||||||||
Sbjct 181 GGCTCTGAATCTGGTTTGGAAAGTGGTAGCGAGTCTGAATCAGGTAAGGAA-GAAGAGAG 239
Query 276 ACGTAGAAGTAGAAAGGATAGAGGGAAGAGGAAATCAGATCGGAAATCATCTAGGAGTAG 335
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 ACGTAGAAGTAGAAAGGATAGAGGGAAGAGGAAATCAGATCGGAAATCATC------TAG 293
Query 336 GAGAAGACGTCGTGATTATTCGAGTAGTAGCTCAGATTCCGAATCAGAATCGGAGTCGGA 395
|||||||||||||||||| ||||||||||||||||||| || |||||||| ||||
Sbjct 294 GAGAAGACGTCGTGATTACTCGAGTAGTAGCTCAGATT-CG-----GAATCGGAATCGG- 346
Query 396 ATATTCTGATTCtgaggagagtgagagtgaagatgagagaagaaggaggaagaggaagag 455
| | |||||||| |||||||||||||||||||| || || ||||||||||||||
Sbjct 347 --A----G--TCTGAGGAAAGTGAGAGTGAAGATGAGAGGAGGAGAAGGAAGAGGAAGAG 398
Query 456 aaaggagagggaagaggaagagaaagagaggaagagaaggagaagagagaaagataagaa 515
|||| || | ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 399 -AAGG-GA--G-AGA-GAAGAGAAAGAGAGGAAGAGAAGAAGAAGAGAGAAAGATAAGAA 452
Query 516 gaagaggaacaagtctgataaagatggagataagaagaggaaggagaagaagaagaagaa 575
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 453 GAAGAGGAACAAGTCTGATAAAGATGGAGAT------AGGAAGAAGAAGAAGAAGAAGAA 506
Query 576 gtctgagaaagtgaagaaagGAGCTGTTACTGAATCATGGGGCAAGTATGGAATCATCAG 635
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 507 GTCTGAGAAAGTGAAGAAAGGAGCTGTCACTGAATCATGGGGGAAGTATGGAATCATCAG 566
Query 636 AGAAACTGATATGTGGAATAAACGTCCAGAGTTCACAGCATGGTTGCTTGAAGTAAAGAA 695
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 567 AGAAACTGATATGTGGAATAAACGACCAGAGTTCACAGCATGGTTGCTTGAAGTAAAAAA 626
Query 696 GGTTAATTTGGAAAGCTTGCCACCTTGGGAAGAGAAGAAAATGTTTAAAGATTTTATGGA 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GGTTAATTTGGAAAGCTTGCCACCTTGGGAAGAGAAGAAAATGTTTAAAGATTTTATGGA 686
Query 756 GGATCATAATACTGGTACATTTACCTCGAAAAAATACTATGACATTGATGGTTACTATAG 815
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 AGATCATAATACGGGTACATTTACCTCGAAAAAATACTATGACATTGATGGTTACTATAG 746
Query 816 ACTTAAGTTGGAAAAAGAGATGAAAAAGGGTTTGAAGAAAGCTGGGATTAGTGAACGTAC 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 ACTTAAGTTGGAAAAAGAGATGAAAAAGGGTTTGAAGAAAGCTGGGATTAGTGAACGTAC 806
Query 876 TGTGTTCAATGATGAGGAACAACGCCGACTGGAGATGCAGGAATTACGTGAAAGGCAGAA 935
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct 807 TGTGTTCAATGATGAGGAACAACGCCGGCTAGAGATGCAGGAATTACGCGAAAGGCAAAA 866
Query 936 GGAAGAAGAAGTGTTAGCTCTAAAGCGATCAATGGAAGGTGGAATGGCGCAAGCTATGAA 995
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 867 GGAAGAAGAAGTGTTAGCTCTAAAGCGATCAATGGAAGGCGGAATGGCACAAGCTATGAA 926
Query 996 AGAGCAAGCTCGGCTAAAGGAAGAAATGGTGTACTTATACAAGATTGGGGACATGGAGGG 1055
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 927 AGAGCAGGCTCGGCTAAAGGAAGAGATGGTGTACTTATACAAGATTGGAGACATGGAGGG 986
Query 1056 TGCAGCTGCTATACAGAGAAGGTTGGATCCGGATGTTCCCATGT 1099
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TGCAGCTGCTATACAGAGAAGGTTGGATCCGGATGTTCCCATGT 1030
> Ahg948430 jgi|Araly1|948430|scaffold_800317.1
Length=401
Score = 614 bits (332), Expect = 6e-175
Identities = 384/408 (94%), Gaps = 8/408 (2%)
Strand=Plus/Plus
Query 715 CCACCTTGGGAAGAGAAGAAAATGTTTAAAGATTTTATGGAGGATCATAATACTGGTACA 774
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 CCACCTTGGGAAGAGAAGAAAATGTTTAAAGATTTTATGGAAGATCATAATACGGGTACA 60
Query 775 TTTACCTCGAAAAAATACTATGACATTGATGGTTACTATAGACTTAAGTTGGAAAAAGAG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTACCTCGAAAAAATACTATGACATTGATGGTTACTATAGACTTAAGTTGGAAAAAGAG 120
Query 835 ATGAAAAAGGGTTTGAAGAAAGCTGGGATTAGTGAACGTACTGTGTTCAATGATGAGGAA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGAAAAAGGGTTTGAAGAAAGCTGGGATTAGTGAACGTACTGTGTTCAATGATGAGGAA 180
Query 895 CAACGCCGACTGGAGATGCAGGAATTACGTGAAAGGCAGAAGG-AAGAAGAAGTGTTAGC 953
|||||||| || |||||||| |||||||| |||||||| |||| ||||||||||||||||
Sbjct 181 CAACGCCGGCTAGAGATGCAAGAATTACGCGAAAGGCAAAAGGGAAGAAGAAGTGTTAGC 240
Query 954 TCTAAAGCGATCAATGGAAGGTGGAATGGCGCAAGCTATGAAAGAGCAAGCTCGGCTAAA 1013
||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||
Sbjct 241 TCTAAAGCGATCAATGGAA-----A--GGCACAAGCTATGAAAGAGCAGGCTCGGCTAAA 293
Query 1014 GGAAGAAATGGTGTACTTATACAAGATTGGGGACATGGAGGGTGCAGCTGCTATACAGAG 1073
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 294 GGAAGAGATGGTGTACTTATACAAGATTGGAGACATGGAGGGTGCAGCTGCTATACAGAG 353
Query 1074 AAGGTTGGATCCGGATGTTCCCATGTGATGTGTAGCTTTTTGTTAAGC 1121
|||||||||||| ||||||||||||| ||||| || |||| |||||||
Sbjct 354 AAGGTTGGATCCAGATGTTCCCATGTAATGTGGAGGTTTTGGTTAAGC 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47729892084
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5