BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53810.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917041 jgi|Araly1|917041|Al_scaffold_0008_1792 948 0.0
Ahg476918 jgi|Araly1|476918|fgenesh2_kg.2__2048__AT1G77530.1 464 8e-130
Ahg475033 jgi|Araly1|475033|fgenesh2_kg.2__163__AT1G63140.2 442 4e-123
> Ahg917041 jgi|Araly1|917041|Al_scaffold_0008_1792
Length=1146
Score = 948 bits (513), Expect = 0.0
Identities = 923/1115 (83%), Gaps = 52/1115 (5%)
Strand=Plus/Plus
Query 295 AAAGAAGAACAAGAGGTTGAAGAAGAGGCAAGATTGCTAGCGAGAAGGCTCGCGAATGCA 354
||||| |||||| | ||| |||||||| || ||||||||||| |||||| |||| |||
Sbjct 61 AAAGATGAACAACAAGTT---GAAGAGGCCAGGTTGCTAGCGAGGAGGCTCTCGAACGCA 117
Query 355 GCCGCA-TCACCTATGGTTCTCAAAGCCGCCTTGGAGCTCGGCGTGATCGACACCATCAC 413
|||||| || || |||||||||||||| ||||| |||||||| || ||||||| || |
Sbjct 118 GCCGCATTC-CCCATGGTTCTCAAAGCAGCCTTAGAGCTCGGTGTCATCGACATTATTGC 176
Query 414 CA-CAGTAGGAGGTGGCGATTTGTGGCTCTCACCTTCTGAAATAGCACTAAGACTCCCAA 472
|| || | || | |||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 177 CACCA-TTGGCGATGGC---TTGTGGCTCTCACCTTCCGAGATAGCACTAAGACTCCCAA 232
Query 473 CCAAACCAT-GCAACCTGGAAGCTCCGGCTTTGCTAGACCGTATGCTTCGATTTCTCGTC 531
||||||| | | |||| || ||||||| |||| | ||||||||||| || || |||| |
Sbjct 233 CCAAACC-TAGTAACCCCGAGGCTCCGGTTTTGATTGACCGTATGCTCCGGTTACTCG-C 290
Query 532 -AGCCATTCGGTCTTAAAATGCCGT-A--CTGTAATAGAAGAGAACGGTCAAACCGG-AA 586
||| | || |||| || || ||| | ||||| | |||| |||||||||||||| ||
Sbjct 291 TAGCTACTCAATCTTGAAGTGTCGTAATGTTGTAACAAAAGAAAACGGTCAAACCGGCAA 350
Query 587 AAGTTGAGAGGGTATATGCAGCTGAACCGGTCTGCAAATATCTCTTGAACAAAAGTGACG 646
|| | |||||||||||| ||||||||||||||||||| | |||||||||||| |||||
Sbjct 351 AA-TCGAGAGGGTATATACAGCTGAACCGGTCTGCAAGTTTCTCTTGAACAATAGTGA-T 408
Query 647 ACGTCTCGGGTTCTTTTGCATCGCTCTTTATGCTTG-ACCTCAGCGACGT-ATTTATCAA 704
| | ||| || |||||||| || || | ||| || |||| |||||||| | |||||
Sbjct 409 A-G-CTCAGGATCTTTTGCGTCTCTGATCATG-ATGAACCTTAGCGACGTCA-ACATCAA 464
Query 705 GACATGGACACATCTCGAA-GATGTGATATTAGAAGGAAGAGATGCATTTAGTTCTGCCC 763
||| ||| ||||||| || | ||| || |||||||||| ||||||||| | |||||| |
Sbjct 465 GACTTGGGGACATCTC-AAGGGTGTCATTTTAGAAGGAAAAGATGCATTCAATTCTGCTC 523
Query 764 ATGGGATGAAACTATTCGAATACATCCAAG-CCGATGAGCGAT-TTGGTAAAGTGTTTAA 821
||||||||||| |||| |||||||| | | || |||| | || | | ||| ||||||
Sbjct 524 ATGGGATGAAATTATTTGAATACATGC-GGTCCAATGAACAATACT-GCAAACTGTTTAG 581
Query 822 CCGGGCTATGTTGGAATCTTCCACCATGGTTACGGAGAA-GGTTCTTA-AATTTTATGAA 879
| |||||||| ||||||||| | ||||||| ||| || |||| || || ||| ||
Sbjct 582 TCAGGCTATGTCGGAATCTTCGTCTATGGTTATGGA-AATAGTTC-TAGAAGCTTACGAT 639
Query 880 GGATTCAAAGATGTGAAGACTTTGGTGGATGTAGGG-GGAGGACTTGGCAACACACTAGG 938
|||||||||||||| |||||||| |||||||| ||| ||||||||||| ||||| || |
Sbjct 640 GGATTCAAAGATGTAAAGACTTTAGTGGATGT-GGGAGGAGGACTTGGTAACACTTTAAG 698
Query 939 TCTCATCACTTCCAAGTATCCTCATCTTATT-GGTATCAATTTCGATTTAG-CTCCGGTG 996
||||||||||||||| ||||||||| || || ||||||||||||||||| | |||| ||
Sbjct 699 TCTCATCACTTCCAAATATCCTCATATT-TTGGGTATCAATTTCGATTT-GCCTCCCGT- 755
Query 997 T-TAGCCAATGCTCATTC-TTATCCCGGTGTGAACCATGTGGCTGGTGATATGTTCATC- 1053
| ||||| |||| || ||| |||||| | || |||| || || |||||||| | |
Sbjct 756 TATAGCCCGCGCTC-CTCTTTACCCCGGTATAAAACATGCAGCGGGAGATATGTTTA-CA 813
Query 1054 AAGATTCCAAAGGGGGATGCCATTTTCATGAAGTGGATAC-TACATGATTGGACGGACGA 1112
|| |||||||| || ||||||||||| ||||| ||||| | |||||||||||||||| ||
Sbjct 814 AAAATTCCAAATGGAGATGCCATTTTTATGAAATGGAT-CTTACATGATTGGACGGAGGA 872
Query 1113 ACAATGCGTAGCA-ATTCTTAAAAACTGTTGGAAAAGTCTCGAAGAAAATGGAAAACTGA 1171
||||||| || | |||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 873 ACAATGCATA-AAGATTCTTAAAAACAGTTGGAAAAGTCTTGAAGAAAATGGAAAAGTGA 931
Query 1172 TAATAGTGGAAATGGTTACACCGGTGGAAGCAAAGAGCGGAGATATATGTTCTAACATTG 1231
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TTATAGTGGAAATGGTTACACCGGTGGAAGCAAAGAGCGGAGATATATGTTCTAACATTG 991
Query 1232 TGTTTGGTATGGACATGACAATGTTAACACAATGTTCAGGTGGTAAAGAGAGAGATCTCT 1291
||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 992 TGTTTGGCATGGACATGACAATGTTAACACAATGTTCGGGTGGTAAAGAGAGATCTCTCT 1051
Query 1292 ATGAGTTTGAAAATTTAGCATATGCATCGGGTTTTTCTCGTTGTGCAATCGTATGCGCTG 1351
|||||||||||||| |||| ||||||||||||||||| ||||||| ||| | |||| |||
Sbjct 1052 ATGAGTTTGAAAATCTAGCGTATGCATCGGGTTTTTCACGTTGTGAAATTGCATGCTCTG 1111
Query 1352 TTTATCCATTTTCCGTCATCGAAATCTACAAATAG 1386
||||||| |||||||||||||||||||| ||||||
Sbjct 1112 TTTATCCGTTTTCCGTCATCGAAATCTATAAATAG 1146
> Ahg476918 jgi|Araly1|476918|fgenesh2_kg.2__2048__AT1G77530.1
Length=1267
Score = 464 bits (251), Expect = 8e-130
Identities = 808/1065 (76%), Gaps = 86/1065 (8%)
Strand=Plus/Plus
Query 367 ATGGTTCTCAAAGCCGCCTTGGAGCTCGGCGTGATCGACACCATCACCAC-AGTAGG-AG 424
|||||||||||||||||||||||||| || || || || || ||| | | | | || |
Sbjct 130 ATGGTTCTCAAAGCCGCCTTGGAGCTTGGAGTCATTGATACGATCGCTGCTACT-GGCA- 187
Query 425 GTGGCGATTTGTGGCTCTCACCTTCTGAAATAGCACTAAGACTCCCAACCAAA-CCATGC 483
||| | |||||||||||| ||||| ||||| | || |||||||| ||| ||| |
Sbjct 188 ACGGC-A--CGTGGCTCTCACCGTCTGAGATAGCGGTTAGTCTCCCAACGAAACCCA--C 242
Query 484 -AA-CCTGGAAGCTCCGGCT-TTGCTAGACCGTATGCTTCGATTTCTCGTCAGCCATTCG 540
|| || ||| || |||| | || || ||||| ||||| ||||| || |||||||| |||
Sbjct 243 TAATCC-GGAGGCGCCGG-TATTACTGGACCGGATGCTGCGATTACTTGTCAGCCACTCG 300
Query 541 GTCTTAAAATGCCGTACTG--T-AATAGAAGAG--AACGGTCAAACCGGAAAAG-TTGAG 594
|||| || |||||| ||| | || | ||||| || ||||||||||| |||| | |||
Sbjct 301 ATCTTGAAGTGCCGT-CTGATTGAA-ACAAGAGAAAATGGTCAAACCGG-AAAGATCGAG 357
Query 595 AGGGTATATGCAGCTGAACCGGTCTGCAAATATCTCTTGAACA-AAAGTGACGACGTCTC 653
||||||||||||||||||||| | ||||| | | ||||||| | | ||||||| | |||
Sbjct 358 AGGGTATATGCAGCTGAACCGATTTGCAAGTTTTTCTTGAA-AGATAGTGACG--G-CTC 413
Query 654 GGGTTCT-T-TTG-CATCGCTCTT-TATGCTTGACC-TCAGCGACGT-ATTTATCAAGAC 707
|||||| | | | | | |||||| | ||| | || | ||| | || | || |||| ||
Sbjct 414 CGGTTCTCTCTCGTCTTTGCTCTTGT-TGC-T--CCAT-AGCCAAGTCA-TTCTCAAAAC 467
Query 708 ATGGACACATCTCGAA-GATGTGATATTAGAAGGAAGAGATGCATTTAGTTCTGCCCATG 766
|||||| ||||| || ||||||||||||||||||||||||||||| || |||||||| |
Sbjct 468 TTGGACAAATCTC-AAGGATGTGATATTAGAAGGAAGAGATGCATTCAGCTCTGCCCACG 526
Query 767 GGATGAAACTATTCGAATACATCCAAGC-C-GATGAGCGATTTGG-TAAAGT-GTTTAAC 822
|||| ||| ||||||||||| | | | ||||| | | || | | | || |||| ||
Sbjct 527 ACATGAGACTTTTCGAATACATT-A-GTTCTGATGAAC-AGTTCGCTGA-GTTGTTTCAC 582
Query 823 CGGGCTATGTTGGAATCTTCCACCATGGTTACGGAGAAGGTTCTTA-AATTTTAT-GAAG 880
||||| |||| |||||||||||| ||||| | | | || ||||| | || | || || |
Sbjct 583 CGGGCCATGTCGGAATCTTCCACTATGGTCATGAAAAAAGTTCT-ACAAGTATACAGA-G 640
Query 881 GATTCAAAGATGTGAAGACTTTGGTGGATGTAGGGGGAGGACTTGGCAAC-ACACTAGGT 939
|||| ||||||| || |||||||||||||| || |||||| |||| ||| | | |||||
Sbjct 641 GATTTGAAGATGTTAACACTTTGGTGGATGTCGGAGGAGGATTTGG-AACCATATTAGGT 699
Query 940 CTCA-TCACTTCCAAGTATCCTCATCTTATTGGTATCAATTTCGATTTAGCTCCGGTGTT 998
|| | |||||||||||||||||||| | | ||| | |||||||| ||||||| ||| ||
Sbjct 700 CT-AGTCACTTCCAAGTATCCTCATATCAAAGGTGTTAATTTCGACTTAGCTCAGGTCTT 758
Query 999 AGC-CAATGCTCATTCTTATCCCGGTGT-GAACCATGTGGCTGGTGATATGTTCATC-AA 1055
| | || ||||| || || ||| || || || | |||| | || || ||||| || ||
Sbjct 759 AACTCA-TGCTCCTTTTTCTCCAGGAGTTGAGC-ATGTCTCCGGAGACATGTTTATTGAA 816
Query 1056 GATTCCAAAGGGGGATGCCAT-TTTCATGAAGTGGATACTACATGATTGGACGGACGAAC 1114
| |||||||||| |||||||| ||| ||||| |||||||||||||||||| ||| || |
Sbjct 817 G-TTCCAAAGGGAGATGCCATCTTT-ATGAAATGGATACTACATGATTGGGGGGATGAGC 874
Query 1115 AATGCGTAGCA-ATTCTTAAAAACT-GTTGGAAAAGTCT-CGAAGAAAATGGAAAACTGA 1171
| || || | ||| ||||||| | ||||||||||||| | ||||| || ||| |||
Sbjct 875 ATTGTATAA-AGATT-TTAAAAAATTGTTGGAAAAGTCTACCT-GAAAAAGGTAAAGTGA 931
Query 1172 TAATAGTGGAAATGGTTACACCGGTGGAAGCAAAGAGCGGA-GA-TATATGTTCTAACAT 1229
| || || || ||| ||||||| ||||| ||||| | | || | | | |||||||
Sbjct 932 TCATTGTAGAGATGATTACACCAATGGAACCAAAGC-CTAATGACTTT-TCCTCTAACAC 989
Query 1230 TGTGTTTGGTATGGACATGACAATGTTAACACAATGTTCAGGTGGTAAAGAGAGAGATCT 1289
|||||| || |||||| || |||||||||||||| || || ||||||||| || |||
Sbjct 990 TGTGTTGGGCATGGACTTGTTGATGTTAACACAATGCTCCGGCGGTAAAGAGCGA--TCT 1047
Query 1290 CTAT-G-AGTTTGAAAATTTAGCATATGCATCGGGTTTTTCT-CGTTGTGCAATCGTATG 1346
|| | | |||| || ||||| || | ||| || || ||| || || |||| |||| ||||
Sbjct 1048 CTTTCGCAGTTCGAGAATTTGGCGTTTGCGTCAGGCTTT-CTTCGATGTGAAATCATATG 1106
Query 1347 CGCT-GTTTATCCATTTTCCGTCATCGAAATCTACAAATA-GATT 1389
|| | |||| ||| ||| || |||||| || | | ||| ||||
Sbjct 1107 T-CTTGCTTATTCATATTCTGTTATCGAATTCCATAGATAAGATT 1150
> Ahg475033 jgi|Araly1|475033|fgenesh2_kg.2__163__AT1G63140.2
Length=1178
Score = 442 bits (239), Expect = 4e-123
Identities = 867/1157 (75%), Gaps = 95/1157 (8%)
Strand=Plus/Plus
Query 280 AAACCGGATCGAGTTAAAGAAGAACAA-GAGGTTGAAGAAG--A-GGCAAGATTGCTAGC 335
||||||||| | | ||||||||| || || |||| |||| | || || |||| |||
Sbjct 50 AAACCGGATTTAATCAAAGAAGAAGAACGA-TTTGACGAAGATACGGTGAGCTTGCAAGC 108
Query 336 -GAGAAGGCTCGCGAATG-CA-GCCGCATCACCTATGGTTCTCAAAGCCGCCTTGGAGCT 392
||| ||| || | ||| || | | | || || ||||||||||||||||| ||||||||
Sbjct 109 GGAG-AGGATCTTGCATGCCATGGC-CTTC-CCCATGGTTCTCAAAGCCGCTTTGGAGCT 165
Query 393 CGGCGTGATCGACACCATCACCACAGTAGGAGGTGGCGATTTGTGGCTCTCACCTTCTGA 452
||||| ||||||| ||||| | ||| || || || |||||||||| ||||||||
Sbjct 166 TGGCGTTATCGACATGATCACTTCTGTA-GA--TGACGGCGTGTGGCTCTCGCCTTCTGA 222
Query 453 AATAGCACTAAGACTCCCAACCAAACC-ATGCAA-CCTGGAAGCTCCGGCT-TTGCTAGA 509
|| || || | || |||||||| || | ||| || ||| || || | | ||||||||
Sbjct 223 GATCGCTCTTGGCCTTCCAACCAAGCCGA-CCAATCC-GGAGGCACCAG-TATTGCTAGA 279
Query 510 CCGTATGCTTCGATTT-CTCGTCAGCCATTCGGTCTTAAAATGCCGTACTGT--AATA-G 565
|| |||| | | ||| | | |||||| || |||| || | |||||| || || | |
Sbjct 280 TCGGATGC-TGGTTTTATTAGCCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAAACG 338
Query 566 AAGAGAACGGTC-AAACCGGA-AAAG-TTGAGAGGGTATATGCAGCTGAACCGGTCTGCA 622
|||| || || || | | |||| |||||||| ||||||||||||||||| ||||
Sbjct 339 GAGAGGAC-ATCGGAA--GTAGAAAGACGGAGAGGGTCTATGCAGCTGAACCGGTTTGCA 395
Query 623 AATATCTCTTGAACAAAAGT-GACGACGTCTCGGGTTCTTTTG-CATCGCTCTTTATGCT 680
| | |||||||| || || || | |||||| ||| | | || | | || |||
Sbjct 396 CGTTTTTCTTGAAC---CGTGGA-GATGGCTCGGGGTCTCTCGCCA-CTTTGTTCATG-G 449
Query 681 TGACCT-C-A-GCGACGTAT-TTATCAAGACATGGACACATCTCGAAGATGTGATATTAG 736
| | || | | |||| || | || | |||| ||| |||||||| |||||||||||||||
Sbjct 450 T-A-CTCCAAGGCGAAGTCTGTT-TGAAGAGTTGGGCACATCTCAAAGATGTGATATTAG 506
Query 737 AAGGAAGAGATGCATTTAGTTCTGCCCATGGGATGAAACTATTCGAATACATCCAAG-CC 795
|||||| ||||||||| || ||||| ||||| ||||| | |||||| |||| | |
Sbjct 507 AAGGAAAAGATGCATTCAGCTCTGCTCATGGCATGAAGTTTTTCGAACACAT--TGGTTC 564
Query 796 G-ATGAGCGATTTGGTAAAG-TGTTTAACCGGGCTATGTTGGAATCTTCCACCA-TGGTT 852
| |||| | ||||| | || ||||||||| || |||| |||| |||||| | | ||
Sbjct 565 GAATGAACAATTTGCT-GAGATGTTTAACCACGCAATGTCGGAAGCTTCCA-GATTAATT 622
Query 853 ACGGAGAAGGTTCTTA-AATTTTATGAAGGATTCAAAGATGTGAAGACTTTGGTGGATGT 911
| | |||||||| ||| || |||| |||||||| ||||||| || ||||||||||||||
Sbjct 623 ATGAAGAAGGTT-TTAGAAGTTTACAAAGGATTCGAAGATGTAAATACTTTGGTGGATGT 681
Query 912 AGGG-GGAGGACTTGGCAA-C-ACACTAGGTCTCA-TCACTTCCAAGTATCCTCATCTTA 967
||| || ||| |||| || | || ||||||| | | |||||||||||||||||| |||
Sbjct 682 -GGGAGGGGGAATTGG-AACCGTCA-TAGGTCT-AGTGACTTCCAAGTATCCTCATATTA 737
Query 968 TTGGTATCAATTTCGATTTAGC-TCCGGTGTTAG-CCAATGCTCATTCTT-ATCCCGGTG 1024
|| ||||||||||| |||| | |||| |||| || |||||| |||| || || |
Sbjct 738 AAGGCGTCAATTTCGATCTAGCAT-CGGTTTTAGTCC-ATGCTC-CTCTTCATAAAGGAG 794
Query 1025 TGAACCATGTGGCTGGTGATATG-TTCATCAAGATTCCAAAGGGGGATGCCATTTTCATG 1083
|| | ||||| | || |||||| || | || |||||||| || |||||||| ||||||
Sbjct 795 TGGAGCATGTTTCAGGAGATATGTTTAAAGAA-ATTCCAAAAGGAGATGCCATCTTCATG 853
Query 1084 AAGTGGATACTACATGATTGGACGGACGAACAATGCGTAGCA-ATTCTTAAAAACTGTTG 1142
||||||||||||||||||||||| |||||| | || ||| | ||||| |||||||||||
Sbjct 854 AAGTGGATACTACATGATTGGACTGACGAAGATTGTGTAA-AGATTCTAAAAAACTGTTG 912
Query 1143 GAAAAGTCT--CGAAGAAAATGGAAAACTGATAATAGTGGAAATGGTTACACCGGTGGAA 1200
||||||||| | || ||| ||||| |||||||||| || |||||||| || ||||||
Sbjct 913 GAAAAGTCTTTCCAATAAA--GGAAAGGTGATAATAGTCGAGATGGTTACGCCAGTGGAA 970
Query 1201 GCAAAGAGCGGA-GATATATGTTCTAACATTGTGTTTGGTATGGACATGACAATGTTAAC 1259
|||||| | | ||||| | ||||||| ||||||| | ||||||||| ||||||||
Sbjct 971 CCAAAGATCA-ACGATATTTCTTCTAACGTTGTGTTAGCCATGGACATGTTGATGTTAAC 1029
Query 1260 ACAATGTTCAGGTGGTAAAGAGAGAGA-TCTCT-ATGAGTTTGAAAATTTAGCATATGCA 1317
|||| | ||||||||||| ||||| || ||| | | | ||||| | | |||| | || |
Sbjct 1030 ACAAAGCTCAGGTGGTAAGGAGAG-GACTCTTTCACAA-TTTGAGACTCTAGCTTCTG-A 1086
Query 1318 T-CGGGTTTTTCT-CGTTGTGCAATCGTATG-CGCTGTTTATC-CATTTTCCGTCATCGA 1373
| |||||||| || ||||||| |||| | || | ||||| || ||| | ||| |||||
Sbjct 1087 TTCGGGTTTT-CTTCGTTGTGAAATCATTTGTCA-TGTTT-TCTCATATAGCGTTATCGA 1143
Query 1374 AAT-CTACAAATAGATT 1389
| | | ||||||| |||
Sbjct 1144 ATTAC-ACAAATA-ATT 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5