BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53820.1 Length=533 Score E Sequences producing significant alignments: (Bits) Value Ahg495458 jgi|Araly1|495458|fgenesh2_kg.8__1274__AT5G53820.1 719 0.0 > Ahg495458 jgi|Araly1|495458|fgenesh2_kg.8__1274__AT5G53820.1 Length=502 Score = 719 bits (389), Expect = 0.0 Identities = 416/429 (97%), Gaps = 1/429 (0%) Strand=Plus/Plus Query 5 CACAACTCATAATTACAAAAGCTAAACAGTTCTCTAA-AATCAAAGTAACTTTTTTCCGA 63 ||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||| | | Sbjct 1 CACAACTCACAATTACAAAAGCTAAACAGTTCTTTAACAATCAAAGTAAGTTTTTTTCAA 60 Query 64 AGAGAAGATTAGAAAATGTCTAACAACAGTCAGAGCATGAGCTTCAACGCTGGCCAAGCT 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGAGAAGATTAGAAAATGTCTAACAACAGTCAGAGCATGAGCTTCAACGCTGGCCAAGCT 120 Query 124 AAAGGCCAAACTCAGGAGAAGGCAAGCAACTTGATAGACAAGGCCTCCAATGCTGCCCAA 183 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 AAAGGCCAAACCCAGGAGAAGGCAAGCAACTTGATGGACAAGGCCTCCAATGCTGCCCAA 180 Query 184 TCTGCTAAGGAATCTATCCAAGAGGGTGGACAGCAGCTGAAGCAGAAGGCACAAGGTGCG 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTGCTAAGGAATCTATCCAAGAGGGTGGACAGCAGCTGAAGCAGAAGGCACAAGGTGCG 240 Query 244 AGTGAGACCATTAAGGAAAAGACCGGCATCAGCAAATGAGAAGCACGTTCTAATAATAAT 303 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGTGAGACCATTAAGGAAAAGACCGGCATCAGCAAATGAGAAGCACGTTCTAATAATAAA 300 Query 304 TTATGTTTTCAGTTTTCGTTTTTATTCTACCAGAAAAATAATTAGATAGATATGTCTATC 363 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 TTATGTTTTCTGTTTTCGTTTTTATTCTACCAGAATAATAATTAGATAGATATGTCTATC 360 Query 364 TAAATCCAAGAATATGGATTTCGATCGAAGCCATTTAGGCAATTACTTTTGCTTTTCTAT 423 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 361 TAAATCCAAGACTATGGATTTCGATCGAAGCCATTTAGGCAATTACTTTTGCTTCTCTAT 420 Query 424 Gtttttttt 432 ||||||||| Sbjct 421 GTTTTTTTT 429 Score = 102 bits (55), Expect = 2e-21 Identities = 67/72 (93%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 462 ACTCTTGTCTATTGATAATTTGTAGCCATGCAGTTATTTCTATAATATTTAAATAAATGA 521 |||||||||| || |||||||||||||||||||||||||||||| | || |||||||||| Sbjct 434 ACTCTTGTCTCTTAATAATTTGTAGCCATGCAGTTATTTCTATA-T-TT-AAATAAATGA 490 Query 522 CATGATTACATG 533 |||||||||||| Sbjct 491 CATGATTACATG 502 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19421194801 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5