BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53820.1

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495458 jgi|Araly1|495458|fgenesh2_kg.8__1274__AT5G53820.1         719    0.0  


> Ahg495458 jgi|Araly1|495458|fgenesh2_kg.8__1274__AT5G53820.1
Length=502

 Score =  719 bits (389),  Expect = 0.0
 Identities = 416/429 (97%), Gaps = 1/429 (0%)
 Strand=Plus/Plus

Query  5    CACAACTCATAATTACAAAAGCTAAACAGTTCTCTAA-AATCAAAGTAACTTTTTTCCGA  63
            ||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||| | |
Sbjct  1    CACAACTCACAATTACAAAAGCTAAACAGTTCTTTAACAATCAAAGTAAGTTTTTTTCAA  60

Query  64   AGAGAAGATTAGAAAATGTCTAACAACAGTCAGAGCATGAGCTTCAACGCTGGCCAAGCT  123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGAGAAGATTAGAAAATGTCTAACAACAGTCAGAGCATGAGCTTCAACGCTGGCCAAGCT  120

Query  124  AAAGGCCAAACTCAGGAGAAGGCAAGCAACTTGATAGACAAGGCCTCCAATGCTGCCCAA  183
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  121  AAAGGCCAAACCCAGGAGAAGGCAAGCAACTTGATGGACAAGGCCTCCAATGCTGCCCAA  180

Query  184  TCTGCTAAGGAATCTATCCAAGAGGGTGGACAGCAGCTGAAGCAGAAGGCACAAGGTGCG  243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TCTGCTAAGGAATCTATCCAAGAGGGTGGACAGCAGCTGAAGCAGAAGGCACAAGGTGCG  240

Query  244  AGTGAGACCATTAAGGAAAAGACCGGCATCAGCAAATGAGAAGCACGTTCTAATAATAAT  303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  241  AGTGAGACCATTAAGGAAAAGACCGGCATCAGCAAATGAGAAGCACGTTCTAATAATAAA  300

Query  304  TTATGTTTTCAGTTTTCGTTTTTATTCTACCAGAAAAATAATTAGATAGATATGTCTATC  363
            |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  301  TTATGTTTTCTGTTTTCGTTTTTATTCTACCAGAATAATAATTAGATAGATATGTCTATC  360

Query  364  TAAATCCAAGAATATGGATTTCGATCGAAGCCATTTAGGCAATTACTTTTGCTTTTCTAT  423
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  361  TAAATCCAAGACTATGGATTTCGATCGAAGCCATTTAGGCAATTACTTTTGCTTCTCTAT  420

Query  424  Gtttttttt  432
            |||||||||
Sbjct  421  GTTTTTTTT  429


 Score =  102 bits (55),  Expect = 2e-21
 Identities = 67/72 (93%), Gaps = 3/72 (4%)
 Strand=Plus/Plus

Query  462  ACTCTTGTCTATTGATAATTTGTAGCCATGCAGTTATTTCTATAATATTTAAATAAATGA  521
            |||||||||| || |||||||||||||||||||||||||||||| | || ||||||||||
Sbjct  434  ACTCTTGTCTCTTAATAATTTGTAGCCATGCAGTTATTTCTATA-T-TT-AAATAAATGA  490

Query  522  CATGATTACATG  533
            ||||||||||||
Sbjct  491  CATGATTACATG  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19421194801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5