BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53830.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495459 jgi|Araly1|495459|fgenesh2_kg.8__1275__AT5G53830.1 1362 0.0
> Ahg495459 jgi|Araly1|495459|fgenesh2_kg.8__1275__AT5G53830.1
Length=883
Score = 1362 bits (737), Expect = 0.0
Identities = 838/885 (95%), Gaps = 14/885 (2%)
Strand=Plus/Plus
Query 1 CTCATTAATGGAAGTTTCAACATCATCCATGTCTTCAAAACCAGAACAAATGCAAAACCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCATTAATGGAAGTTTCAACATCATCCATGTCTTCAAAACCAGAACAAATGCAAAACCC 60
Query 61 ACCTCC--T-ATGATCTCATCTCCTAGGTTTCAGCCTCAGATAATATCTCCTCATCATCA 117
| |||| | |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AGCTCCTATGATGATCTCATCTCCTAGGTTTCAGCCTCAGATAAGATCTCCTCATCATCA 120
Query 118 TGACCAGCATCAACATCTCTCAAATCCTTATCCAACAACATTTGTTCAAGCAGACACTTC 177
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TGACCAGCATCAACATCTCTCAAATCCTTACCCAACAACATTTGTTCAAGCAGACACTTC 180
Query 178 TACTTTCAAACAAGTCGTTCAGATGCTTACCGGCTCATCCACCGATACCACCACCGGAAA 237
|||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||
Sbjct 181 TACTTTCAAACAAGTCGTCCAGATGCTCACCGGCTCCTCCACCGATAACACCACCGGAAA 240
Query 238 ACACCACGAAGCTCCTTCTCCGGTG---AACAACAACAACAAGGGATCAAGTTTCTCGAT 294
|||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 241 ACACCATGAAGCTCCTTCTCCGGTGAACAACAACAACAACAAGGGGTCAAGTTTCTCGAT 300
Query 295 TCCACCCATCAAGAAAACCAACAGCTTCAAGCTTTACGAGAGAAG-----ACAA-AACAA 348
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 301 TCCACCCATCAAGAAAACCAACAGCTTCAAGCTTTACGAGAGAAGACAAAACAACAACAA 360
Query 349 CAACAACATGTTCGCTAAGAATGACCTAATGATCAATACGTTAAGGCTTCAAAACTCTCA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAACAACATGTTCGCTAAGAATGACCTAATGATCAATACGTTAAGGCTTCAAAACTCTCA 420
Query 409 GAGATTGATGTTCACAGGAGGAAACAGCAGTCATCATCAAAGCCCGAGATTCTCTCCAAG 468
|||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||
Sbjct 421 GAGATTGATGTTCACAGGAGGAAATAGTAGTCATCATCAAAGCCCGAGATTCTCCCCGAG 480
Query 469 AAACAGTTCATCATCAGAAAATATTCTTCTGTCTCCAAGCATGCTGGATTTTCCGAAGCT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAACAGTTCATCATCAGAAAATATTCTTCTGTCTCCAAGCATGCTGGATTTTCCGAAGCT 540
Query 529 AGGGCTAAACAGTCCCGTGACGCCACTGAGAAGCAACGATGACCCCTTCAACAAGTCATC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGGCTAAACAGTCCCGTGACGCCACTGAGAAGCAACGATGACCCCTTCAACAAGTCATC 600
Query 589 ACCTTTGTCATTAGGGAACTCATCGGAAGAAGACAAAGCCATTGCTGATAAGGGCTTTTA 648
||||| ||||||||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct 601 GCCTTTATCATTAGGGAACTCATCTGAAGAAGACAAAGCAATTGCTGAGAAAGGCTTTTA 660
Query 649 TCTTCATCCATCTCCAGTCTCAACTCCTAGAGACTCTCAGCCACTGCTTCTTCCTCTTTT 708
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 661 TCTTCATCCTTCTCCAGTCTCAACCCCTAGAGACTCTCAGCCACTGCTTCTTCCGCTTTT 720
Query 709 TCCGGTTGCTTCTCCGGCGAGGAACTCTTAATCCCGACGATATCCATGAGTGATTTTATA 768
|||| || ||||||||||||| ||| ||| ||||||||||| || ||||||||| ||||
Sbjct 721 TCCGATTACTTCTCCGGCGAGCAACCCTTGATCCCGACGAT--CCTTGAGTGATTATATA 778
Query 769 CATGATATTAAATTATATCTATCTCCGGATTTTGTTTAGCTATAACTAAGATATCTATAA 828
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 779 CATGATATTAAATTATATCTGTTTCCGGATTTTGTTTAGCTATAACTAAGATATCTATAA 838
Query 829 GTTTGATCATAGTTATGGAGTGACTGTAAATTTTGTGCGGttttt 873
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTTGATCTTAGTTATGGAGTGACTGTAAATTTTGTGCGGTTTTT 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5