BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53840.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495460 jgi|Araly1|495460|fgenesh2_kg.8__1276__AT5G53840.1 894 0.0
> Ahg495460 jgi|Araly1|495460|fgenesh2_kg.8__1276__AT5G53840.1
Length=1206
Score = 894 bits (484), Expect = 0.0
Identities = 738/856 (86%), Gaps = 35/856 (4%)
Strand=Plus/Plus
Query 59 TAAGCCAATTACCTGATCATTTGATATGTGTCATTCTGTCTCATCTTTCTACCAAGGATG 118
||||||||||||||||||||||||| ||| ||||| ||||||||| | || ||||| |
Sbjct 2 TAAGCCAATTACCTGATCATTTGATCTGTCAGATTCTTTCTCATCTTCCCACAAAGGAAG 61
Query 119 CTGTAAGAACAAGCATCTTATCCACAAGATGGAGAAATCTTTGGCAATTGGTTCCTGTAT 178
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTGTAAGAACAAGTATCTTATCCACAAGATGGAGAAATCTTTGGCAATTGGTTCCTGTAT 121
Query 179 TGGATTTCGACTCCCGAGAGTTACGGTCGTTCAGTGAGTTTGTGAGTTTTGCTGGCAGtt 238
||||||| || ||| ||||| | || || | ||||||||||| | |||||| |
Sbjct 122 TGGATTTAAACGGCCGCGAGTT-C---CG----GTTA-TTTGTGAGTTTCGTTGGCAGGT 172
Query 239 ttttttATTTACACAAAGACTCATATATACAGAAACTACGTGTATGTATTTA-TGATCTT 297
||||| | | ||||||||||||| |||||| |||||| || || ||| ||| |||||
Sbjct 173 TTTTTGACATCCACAAAGACTCATGTATACAAAAACTATGTTTACGTA-TTAGTGATCAA 231
Query 298 GCTGGTAACTATTATCTCACCTCATGGATAGATCTTGTGACTAGGCATAGGATTCAGCAT 357
|||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 232 GCTGGTAAGTCGTATCTCACCTCATGGATAGATCTTGTGGCTAGGCGTAGGATTCAGCAT 291
Query 358 ATTGATATTAG---TG-TTTTTACCTGTTCTGGCTTCGGTGTCATACCACTAAGCTTGTA 413
|| ||| |||| || |||||||| || ||| ||||||| |||||| || ||||||||
Sbjct 292 ATCGATCTTAGTCATGTTTTTTACC-GTCCTGAATTCGGTGACATACCCCTGAGCTTGTA 350
Query 414 TACTTGTGATACACTCGTACACTTAAAACTCTCTCGAGTCACCATGGTTAACGTCGAGTT 473
||||||||||||||| ||||||||| |||||||| | ||||||||||||| ||||||||
Sbjct 351 TACTTGTGATACACTGGTACACTTACGACTCTCTCTACTCACCATGGTTAATGTCGAGTT 410
Query 474 TGTTTCCTTGCCTTGCCTGAAGATTCTGGACTTAGATTTTGTTAATTTTACCAATGAGAC 533
||||||||| |||||||||||||| ||| | ||||| |||||||| | |||||| |||||
Sbjct 411 TGTTTCCTTACCTTGCCTGAAGATCCTGCATTTAGAGTTTGTTAAATATACCAACGAGAC 470
Query 534 CACGTTGGATAAAATTATCTCATGCTCCCCAGTTCTAGAAGAGTTAACCATTGTC-AAAT 592
||||||||||||| | ||||||||||| |||||| ||||||| |||||||||| | ||||
Sbjct 471 CACGTTGGATAAACTGATCTCATGCTCTCCAGTTTTAGAAGATTTAACCATTG-CAAAAT 529
Query 593 CTTCTGAAGATAATGTAAA-GATTATACAAGTACGCTCTCAGACACTAAAGAGAGTCGAA 651
|||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 530 ATTCTGAAGATAATGCAAATG-TTCTACAAGTACGCTCTCAGACACTAAAGAGAGTCGAC 588
Query 652 ATACATCGGCGGTTTGATCGACATAATGGACTTGTTATCGATACTCCTCTACTCCAGTTT 711
|||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 589 ATACATGGGTGGTTTGATCGACATACTAGACTTGTTATCGATACTCCTCTACTCCAGTTT 648
Query 712 TTGA-GTATT-AAAGCTCACTCAATAAAGAGCATTGAATTCATCAATCTAGGTTTCACTA 769
|||| | ||| ||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 649 TTGATG-ATTCAAA-CTCACTCAATAAAGAACATTGATTTCATCAATCTAGGTTTCACTG 706
Query 770 CCAAGGTAGATATTGACG-TCAACTTGCT---T-----G-ATCCAAACGACTTATCCAAT 819
||||||||||||| |||| | |||| ||| | | |||||||||||||||||||
Sbjct 707 CCAAGGTAGATATGGACGCT-AACTGGCTCACTACTTTGGATCCAAACGACTTATCCAAC 765
Query 820 AGAAGCATGACGCGTGATTTCTTCACCACTATTTCAAGGGTCAGGTCTCTAGTCATTAGA 879
|||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 766 AGAAGCATGATGCGCGATTTCTTCACCAGTATTTCAAGGGTCAAGTCTCTAGTCATTAGT 825
Query 880 CATGGTACTATCAAGG 895
||| |||||||||||
Sbjct 826 TATGCTACTATCAAGG 841
Score = 470 bits (254), Expect = 1e-131
Identities = 328/361 (91%), Gaps = 15/361 (4%)
Strand=Plus/Plus
Query 957 TGCTGTTTGTTCTATTTCTAATCTGGAAATGCTGCTAAATCTTCTTAAGAGCTGCCCGAA 1016
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 849 TGCTGTTTGTTCTATTTCTAATCTGGAAATGTTGCTAAATCTTCTTGAGAGCTGCCCGAA 908
Query 1017 ACTAGAATCTCTCAGCTTGAAATTGGTTGACTATGAAAAGAATAAAAAAGAAGAGGTGAT 1076
||||||||||||||||||||||||| || ||||| ||||||| ||||||| |||||||||
Sbjct 909 ACTAGAATCTCTCAGCTTGAAATTGTTTAACTATAAAAAGAAGAAAAAAGCAGAGGTGAT 968
Query 1077 GTCTTCGACAGTACCACCACCGTGTTTGGTATCGTCGCTCAAGTTTGTTAAATTGGAAAG 1136
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 969 GTCTTCGACAGT---GCCACCGTGTTTGGTATCGTCGCTTAAGTTTGTTAAATTGGAAAG 1025
Query 1137 TC---AGCTCTTGGGATGTGGAACAGAACTGAAAGTAGCTAGGTACTTCTTGGAGAATTC 1193
|| ||||||| ||||||||||||||| |||||||||| ||||||||| | ||||||||
Sbjct 1026 TCATGAGCTCTTTGGATGTGGAACAGAATTGAAAGTAGCAAGGTACTTCCTCGAGAATTC 1085
Query 1194 AACAATTCTGGAGAAATTGACTCTAAAGATTGATTATATGTATAAGGATGAGGCAAATGT 1253
|||||||||||||||||||||||||| || ||||||| || ||| || ||||||
Sbjct 1086 AACAATTCTGGAGAAATTGACTCTAAGGAATGATTAT-TG-----GGAGGA---AAATGT 1136
Query 1254 AAACCACATTCGCCAGACACTCCATGCAGTACCAAGATGCTCTAGTACTTGTGAAGTTGT 1313
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1137 AAACCACATTCGCCAGACACTCCATGCAATACCAAGATGCTCTAGTACTTGTGAAGTTGT 1196
Query 1314 T 1314
|
Sbjct 1197 T 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5