BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53850.2
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331733 jgi|Araly1|331733|fgenesh1_pm.C_scaffold_8001076 1306 0.0
> Ahg331733 jgi|Araly1|331733|fgenesh1_pm.C_scaffold_8001076
Length=1560
Score = 1306 bits (707), Expect = 0.0
Identities = 746/765 (98%), Gaps = 1/765 (0%)
Strand=Plus/Plus
Query 110 ATGGCGGTGGCTGCAGCGGCGATGATCGGGTTGCCACAGGCGTATCTGGAAGGGAAGGAG 169
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGGTGGCTGCAGCTGCGATGATCGGGTTTCCACAGGCGTATCTGGAAGGGAAGGAG 60
Query 170 GTGAAGGAGACGAGTTCGTTGGTTACTGAACTCTGCCGTCACTTTTATACTCAAGGTTGG 229
||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 61 GTGAAGGAGACAAGTTCGTTGGTCACTGAACTCTGTCGTCATTTTTATACTCAAGGTTGG 120
Query 230 GTGTCTGGCACTGGCGGTAGCATAACGATGAAAGTTCATGATGCTTCGATTCCTAAACCG 289
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GTATCTGGAACTGGCGGTAGCATAACGATGAAGGTTCATGATGCTTCGATTCCTAAACCG 180
Query 290 GAGCAACTTATCGTCATGTCTCCTTCAGGTGTTCAAAAGGAGAGGATGCAACCTGAGGAT 349
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GAGCAACTTATCGTCATGTCTCCTTCAGGTGTTCAAAAGGAGAGGATGCAACCGGAGGAT 240
Query 350 ATGTACATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCA 409
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGTACATCTTATCTGCAAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCA 300
Query 410 AATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGGCATATGAGATGCGA 469
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 301 AATAAGCCTCCTAAGTGTACTGATTGTGCTCCTCTTTTCATGAAGGCATATGAGATGCGA 360
Query 470 AATGCTGGAGCTGTTATTCACAGTCATGGCATGGAATCTTGTCTTGTGACGATGCTGAAT 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATGCTGGAGCTGTTATTCACAGTCATGGCATGGAATCTTGTCTTGTGACGATGCTGAAT 420
Query 530 CCGCAAGCCAAAGAATTCCGTATAACTCACATGGAGATGATAAAAGGGATTCAAGGTCAC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCGCAAGCCAAAGAATTCCGTATAACTCACATGGAGATGATAAAAGGGATTCAAGGTCAC 480
Query 590 GGATACTATGATGAACTTGTTGTCCCAATCATAGAGAACACAGCATATGAGAATGAACTA 649
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GGATACTATGACGAACTTGTTGTCCCAATCATAGAGAACACCGCATATGAGAATGAACTA 540
Query 650 ACAGATTCACTTACCAAAGCTATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGC 709
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACAGATTCACTCACCAAAGCTATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGC 600
Query 710 AATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAGGCTGAATGT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAGGCTGAATGT 660
Query 770 TACCATTATCTGTTCGATGCTGCCATTAAGCTTCATCAACTGGGTCTGGATGCTGCTACC 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TACCATTATCTGTTCGATGCTGCCATTAAGCTTCATCAACTGGGTCTGGATGCTGCTACC 720
Query 830 CCAGACCACGGGCCTATCCGGAGAACCATACATTCACAGA-TCAA 873
|||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 721 CCAGACCACGGGCCTATCCGAAGAACCATACATTCACAGAATCAA 765
Score = 1234 bits (668), Expect = 0.0
Identities = 733/765 (96%), Gaps = 2/765 (0%)
Strand=Plus/Plus
Query 870 TCAAGGATTCAC-AATACGAAAGAGAATGGCCTCGGCGATGGATTGTCCTCGACATTGAA 928
|||| ||||||| || |||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 797 TCAAAGATTCACTAA-ACGAAACAGAATGGCCTCGGCGATGTATTGTCCTCGACATTGAA 855
Query 929 GGAACAACTACGCCCATTACTTTCGTCACAGATGTTCTCTTTCCTTATGCTCGTGAAAAC 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GGAACAACTACGCCCATTACTTTCGTCACAGATGTTCTCTTTCCTTATGCTCGTGAAAAC 915
Query 989 GTTGGAAAGCACCTGAATTTGACATATCACACAGCAGAAACCCAAGAGGATATTAAGTTG 1048
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 916 GTTGGAAAGCACCTGAATTTGACATATGACACAGCAGAAACCCAAGAGGATATTAAGTTG 975
Query 1049 TTGCGGGCTCAAGTTGAGGAAGACTTGAGAGAGGGTGTAACCGGCGCTGTTCCTATCCCT 1108
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 976 TTGCGGGCTCAAGTTGAGGAAGACTTGAGACAGGGTGTAACCGGCGCTGTTCCTATTCCT 1035
Query 1109 CATGCTGATGAAGGAAAAGAAAAGGTGATTGCCGCTATGGTCTCAAACGTAGAGGCAATG 1168
||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1036 CATGCTGATGAAGGAAAGGAAAAGGTCATTGCCGCTGTGGTCTCAAACGTAGAGGCAATG 1095
Query 1169 ATAAGAGCTGATAGAAAGATCACTGCTTTAAAGGAATTGCAGGGTCACATATGGCGAACA 1228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 ATAAGAGCTGATAGAAAGATCACTGCTTTAAAGGAATTGCAGGGTCACATATGGCGAACG 1155
Query 1229 GGTTTTGAGTGTGATGAACTGAAAGCTATTGTTTTTGAGGATGTAGCAGATGCTTTAGAG 1288
|||||||||||| |||||||| || || ||||||| ||||||||||||||||||||||||
Sbjct 1156 GGTTTTGAGTGTAATGAACTGGAATCTGTTGTTTTCGAGGATGTAGCAGATGCTTTAGAG 1215
Query 1289 AAATGGCATTCTTCAGGAATTAAGGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAA 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AAATGGCATTCTTCAGGAATTAAGGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAA 1275
Query 1349 AAGCTTCTCTTTGGGAACACAGACTATGGAGATCTGAGAAAGTATATATCTGGCTTTTTC 1408
|||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct 1276 AAGCTTCTCTTTGGGAACACCGACTATGGAGATCTGAGAAAGTATTTATCTGGGTTTTTC 1335
Query 1409 GACACTACAATCGGAAACAAGAAAGAAAGTAGAAGTTACAAGGAGATAAAAGAAACATTG 1468
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 1336 GACACTACAATCGGAAACAAGAAAGAAAGTAAAAGTTACAAGGAGATTACAGAAACATTG 1395
Query 1469 GGAGTGGATGATCCTGCAGAGATAATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCT 1528
||||||||| ||||| |||| || ||||||| ||||||||||||||||||||| ||||
Sbjct 1396 GGAGTGGATAATCCTTCAGACATTTTGTTTGTAACAGATGTTTATCAAGAAGCCACAGCT 1455
Query 1529 GCAAAAGCCGCAGGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCG 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 GCAAAAGCCGCAGGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCG 1515
Query 1589 GAAAATCATGGGTTCAAGACTGTCACATCATTCTCCCAAATCTAG 1633
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1516 GAAAATCACGGGTTCAAGACTGTCACATCATTCTCCCAAATCTAG 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5