BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53860.4
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949999 jgi|Araly1|949999|scaffold_801886.1 1332 0.0
> Ahg949999 jgi|Araly1|949999|scaffold_801886.1
Length=1309
Score = 1332 bits (721), Expect = 0.0
Identities = 768/791 (97%), Gaps = 2/791 (0%)
Strand=Plus/Plus
Query 68 TCTTCTTCATCTTCTCCAATGTCGAGAGGACCAGGTCGTTTAATACAGAACGTGACACAG 127
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TCTTCTTCGTCTTCTCCAATGTCGAGAGGACCAGGTCGTTTAATACAGAACGTGACACAG 62
Query 128 TTCGCTGATGCTCAATTCAAACAATTCTCTACTCGTTATGGACAACAAGTTATAGACATT 187
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 63 TTCGCTGATGCTCAATTCAAACAATTCTCTACTCGTTATGGACAACAAGTCATAGACATT 122
Query 188 CTCGATTTTCCAATCAAGCTCGTCTTGTCTCCTTTCACTCTCGCCTTTGATATCGCTGGC 247
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 123 CTCGATTTCCCAATCAAGCTTGTCTTGTCTCCTTTCACTCTCGCTTTTGATATCGCTGGC 182
Query 248 TCTGCACCTCGTGGTTTTGGCATCCCTGAGTTCATCTCCAAAATTTCGTATCTCTCTGTT 307
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 183 TCTGCACCTCGTGGTTTTGGCATCCCTGAATTCATCTCCAAAATTTCGTATCTCTCTGTT 242
Query 308 TTTGCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGAAAGAAAGTCATA 367
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 243 TTCGCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGGAAGAAAGTCATA 302
Query 368 TGCCAAAGGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCACTATGTGCAAA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TGCCAAAGGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCACTATGTGCAAA 362
Query 428 GGAACAGGGAGTGTTCATTACCAAATCAAAGATTACAACTTGAGAAGTGGAGAGAAACCA 487
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GGATCAGGGAGTGTTCGTTACCAAATCAAAGATTACAACTTGAGAAGTGGAGAGAAACCA 422
Query 488 ACAGCAGATTGTGTCGCAGATGCTATAGTTGAGAATCGAGCTGAGTTAGTTCATCTTCCC 547
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 423 ACAGCAGATTGTGTCGCAGATGCCATAGTTGACAATCGAGCTGAGTTGGTTCATCTTCCC 482
Query 548 TCCTCCTTCAACCATAGTGCTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACG 607
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TCCTCCATCAACCATAGTGCTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACG 542
Query 608 GGTGCGATGAGCTGTACTGAGTGCAAGAACAAGCTGCAAGTCAGAATCTCAGCTGATGAT 667
|| | ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 543 GGCGTGATGAGCTGTACTGAGTGCAAGAACAAGCTGCAAGTCAGGATCTCGGCTGATGAT 602
Query 668 ATCATGGAACCTCCATGGAAAGCCTATAATGTGCTGAAGAAGATGGATTATCCGTACGAG 727
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 603 ATCATGGAACCTCCATGGAAAGCCTATAATGTGCTGAGGAAGATGGATTATCCTTACGAG 662
Query 728 CACATTGTTCACAGCATGAAAGATCCCAGCATTGCAAATTTCTGGTTGATCACTTTGCCT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CACATTGTTCACAGCATGAAAGATCCCAGCATTGCAAATTTCTGGTTGATCACTTTGCCT 722
Query 788 CAGATTGTGGGTGGGTTTGATTATGATGAAGATGTCAAGAAGAAAATATGGTGGCAATAT 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CAGATTGTGGGTGGGTTTGATTATGATGAAGATGTCAAGAAGAAAATATGGTGGCAATAC 782
Query 848 GAGTTGAATCT 858
||| ||||||
Sbjct 783 GAG--GAATCT 791
Score = 872 bits (472), Expect = 0.0
Identities = 511/530 (96%), Gaps = 1/530 (0%)
Strand=Plus/Plus
Query 954 ATACTGATGAATCTATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACGCAATCCTG 1013
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATAC-GAGGAATCTATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACGCAATCCTG 837
Query 1014 GCTGGGAATATTTGCAGGATGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTGGGAATATTTGCAGGATGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACC 897
Query 1074 CCGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCA 1133
| ||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 898 CTGTCATAGTGAAAAATGTTCTTTATTACAAGGCGAAGAAATCTCTGGAGGCTGAAGTCA 957
Query 1134 CGAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTGAACTGAATCTCCCATTGAATA 1193
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 958 CGAAACTCAGTCCACCTCCCCGCCCTCAGAATTGGGGTGAACTGAATCTCCCATTGAATA 1017
Query 1194 TTTCCTCTTGGAGTGAAGAGGATCTCAAAAACCCGGCAAAACTGTACGAGAAGACAGTTC 1253
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1018 CTTCCTCTTGGAGTGAAGAGGACCTCAAAAACCCGGCAAAACTGTATGAGAAGACAGTTC 1077
Query 1254 TTCTCAATGCTCAAAGAGAAATCGCAGACAAAATCTTGGATGCACAATGGGAAGCTAAAT 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTCTCAATGCTCAAAGAGAAATCGCAGACAAAATCTTGGATGCACAATGGGAAGCTAAAT 1137
Query 1314 GGCGTCAAGAGAAGGTGGAGGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACT 1373
|||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1138 GGCGCCAAGAGAAGGTGGAGGAAATGTTGGAGGAGAAAGTGAGACCTTTCATCCAAGACT 1197
Query 1374 CAAGCATGGCTGTTCTTCCACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAGG 1433
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 CAAGCATGGCTGTTCTTCCGCAACCCATCTTGTTAAAGTCACCGAAGAAAGCTCAAAAGG 1257
Query 1434 GAAGCCGGCAAAGGAAGTGGTGGTTCTTCTAACCTGCCAAGTGTGTCGAA 1483
|||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1258 GAAGCCGGCAAAGGAAGTGGTGGTTCTTTTAACCAGCCAAGTGTGTCGAA 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64943867725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5