BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53870.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917049 jgi|Araly1|917049|Al_scaffold_0008_1800 582 2e-165
> Ahg917049 jgi|Araly1|917049|Al_scaffold_0008_1800
Length=972
Score = 582 bits (315), Expect = 2e-165
Identities = 437/493 (89%), Gaps = 19/493 (4%)
Strand=Plus/Plus
Query 57 ATGTCGGCGATCATGAAAAGTCTCTGTTTCTCCTTCCTTATCCTCGCTTCATTTGCAACT 116
||||||||||||||||||| ||||||||| || ||||| ||||||||||| |||||||||
Sbjct 1 ATGTCGGCGATCATGAAAACTCTCTGTTTTTCTTTCCTCATCCTCGCTTCTTTTGCAACT 60
Query 117 TTCTTCTCCGTTGCTGATGCATGGAGGTTTAACGTCGGAGGTAACGGCGCTTGGGTTACA 176
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 61 TTCTTCTCTGTTGCTGATGCATGGAGGTTTAACGTCGGAGGTAACGGAGCTTGGGTTATA 120
Query 177 AATCCTCAAGAAAACTACAATACTTGGGCTGAAAGAAACCGTTTCCAAGTCAATGACTCT 236
|| ||||||||||||||||| | |||||||||||||||||||||||||| ||
Sbjct 121 AACCCTCAAGAAAACTACAA-A---------AAAGAAACCGTTTCCAAGTCAATGACACT 170
Query 237 CTCT--A--TTTTAAGTACGCGAAGGGATCAGACTCTGTTCAACAAGTGATGAAAGCAGA 292
|||| | ||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 171 CTCTGTAAATTTTAAGTATGCGAAGGGATCAGATTCTGTTCAACAAGTGATGAAGGCAGA 230
Query 293 TTTTGATGGATGCAACGTTAGAAATCCGATCAAGAACTTCGAAAATGGTGAATCTGTGGT 352
||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 231 TTTTGATGGCTGCAATGTTAGAAATCCGATCAAGAACTTTGATAATGGTGAATCTGTTGT 290
Query 353 TACTCTTGATCGATCTGGTGCTTTTTATTTCATAAGCGGTAATCAAGATCACTGTCAAAA 412
|||||||||||||||||| ||||||| |||||||| |||||| ||||||||||| ||||
Sbjct 291 GACTCTTGATCGATCTGGTCCTTTTTACTTCATAAGTGGTAATGAAGATCACTGTAAAAA 350
Query 413 GGGACAGAAATTGATCGTCGTTGTCCTCGCCGTCAGAAATCAACCTT-CGGCTCCGG--- 468
|||||||||| ||||||||||||| |||||||||||| |||| || || ||||
Sbjct 351 GGGACAGAAACTGATCGTCGTTGTTCTCGCCGTCAGAGATCA-CCAGACGCCTCCTAAAT 409
Query 469 CTCATTCCCCTGTTCCTTCAGTTTCTCCTACTCAACCTCCTAAATCTCATTCCCCTGTTT 528
|||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||
Sbjct 410 CTCATTCCCCTGTTCCTTCAATTTCTCCGGCTCAACCTCCTAAATCTCACTCCCCTGTTT 469
Query 529 CTCCCGTTGCTCC 541
|||||||| ||||
Sbjct 470 CTCCCGTTTCTCC 482
Score = 252 bits (136), Expect = 6e-66
Identities = 194/221 (88%), Gaps = 7/221 (3%)
Strand=Plus/Plus
Query 954 CCATCCCCTGTTTCTTCCCCATCACCTGATCAGTCTGCTGC-TC-CC-TCTGACCAGTCT 1010
||||||||||||||||| ||| | |||| ||||||| |||| || || ||||||||| |
Sbjct 754 CCATCCCCTGTTTCTTCTCCAACCCCTGTTCAGTCTCCTGCTTCTCCTTCTGACCAGACA 813
Query 1011 ACACCCTTGGCACCTTCTCCTTCCGAAACAACTCCGACCGCCGATAACATCACTGCGCCG 1070
||||| ||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 814 ACACCTTTGTCACCTTCTCCTTCGGAAACAACTCCGACCGCCGATAGCATCACAGCGCCG 873
Query 1071 GCTCCTAGTCCCAGGACAAACTCAGCAAGTGGTTTAGCCGTTACTTCGGTTATGTCTACA 1130
|| || |||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 874 GCCCCAAGTCCCAGAAAAAACTCAGCAAGTGGTTTAGCCGTTACTTCGGTTATGACTACA 933
Query 1131 CTATTTAGTGC-GACTTTTACC-TTTCTGATGTTTGCTTAA 1169
||||| |||| | ||| |||| ||| ||||||||||||||
Sbjct 934 CTATTAAGTGTTG-CTTCTACCATTT-TGATGTTTGCTTAA 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5