BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53880.1

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950003 jgi|Araly1|950003|scaffold_801890.1                        355    2e-97


> Ahg950003 jgi|Araly1|950003|scaffold_801890.1
Length=253

 Score =  355 bits (192),  Expect = 2e-97
 Identities = 223/237 (94%), Gaps = 5/237 (2%)
 Strand=Plus/Plus

Query  100  agaga-gaaaaTGAAGTTCTTGTTCCAGTGTCCATGTTGCTCTTGCTTCTGCTTCATGAA  158
            |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  17   AGAGATAAAAATGAAGTTCTTGTTCCAGTGTCCATGTTGCTCTTGCTTCTGCTTCATGAA  76

Query  159  ACCAAAGCCGGGCAAACCAAAAGCTGTTGGAGATACAAAACCaaaggaggagaagaagaa  218
            ||||||||| ||||||||||||||||||||||||  |||||||||||| |||||||||||
Sbjct  77   ACCAAAGCCAGGCAAACCAAAAGCTGTTGGAGATGTAAAACCAAAGGAAGAGAAGAAGAA  136

Query  219  agaggtgaagaaagaagagatcaagaaagaggagaagaaagaagaga--a-gaaagaaga  275
            ||||| |||||||||||||||||||||||||||||||||||||||||  | |||||||||
Sbjct  137  AGAGGCGAAGAAAGAAGAGATCAAGAAAGAGGAGAAGAAAGAAGAGATCAAGAAAGAAGA  196

Query  276  gaagaaggaaaccaaagcagagaagGCTGAGTGAAAA-CTCTACTTTGAGAAAATGT  331
            |||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct  197  GAAGAAGGAAGCCAAAGCAGAGAAGGCTGAGTGAAAAACTCTGCTTTAAGAAAATGT  253



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18543616254


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5