BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53890.1
Length=3438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495467 jgi|Araly1|495467|fgenesh2_kg.8__1283__AT5G53890.1 5094 0.0
> Ahg495467 jgi|Araly1|495467|fgenesh2_kg.8__1283__AT5G53890.1
Length=3388
Score = 5094 bits (2758), Expect = 0.0
Identities = 3189/3399 (94%), Gaps = 22/3399 (1%)
Strand=Plus/Plus
Query 44 GAAGATACGTGTTGCTGATTTCAATTTGCTTCCACAATGTTGCTTCAACTACAAGTTGTT 103
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAAGATACGTGTTGCTGATTTCAATTTGCTTGCACAATGTTGCTTCAACTACAAGTTGTG 60
Query 104 AAAGCTTGATTCTTTTTGGGACATGAGCATGTGACTTATGAAAGTTTTAGTCTTTAT-TT 162
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 61 AAAGCTTGATTC-TTTTGGGACATGAGCATGTGACTTATGAAAGTTTTAGTCTTT-TGCT 118
Query 163 GTGATTTGAGCTGGCTAGAGAAGACTCTTGTCTCTGTTTGATAG-TAGTCATGGTGATCA 221
|||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 119 GTGATTTGAGCTGGCTAGAGAAGACTCTTGTCTCTGTTTG-TTGTTAGTCATGGTGATCA 177
Query 222 TTCTCCTATTGGTCTTCTTTGTTGGTTCTTCTGTGAGCC-AACCATGTCATCCCAACGAC 280
|||||||||||| ||||||||||||||| |||||||||| | |||||||||||| ||||
Sbjct 178 TTCTCCTATTGGCCTTCTTTGTTGGTTCATCTGTGAGCCTGA-CATGTCATCCCAGCGAC 236
Query 281 TTATCTGCGCTCCGGGAATTGGCAGGAGCGTTGAAGAACAAGTCTGTTACAGAATCTTGG 340
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 237 TTATCTGCACTCCGGGAATTCGCAGGAGCGTTGAAGAACAAGTCTGTTACGGAATCTTGG 296
Query 341 TTAAATGGTTCACGTTGTTGTGAATGGGATGGTGTGTTTTGTGAAGGGAGTGATGTTTCT 400
||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 TTAAACGGTTCGCGTTGTTGTGAATGGGATGGTGTGTTTTGTGAAGGGGGTGATGTTTCT 356
Query 401 GGTCGAGTTACAAAGTTGGTT-TTACCTGAAAAAGGTTTGGAAGGTGTGATTTCGAAGTC 459
||||||||||||||||||||| || ||| || ||||||||||||||||||||| |||
Sbjct 357 GGTCGAGTTACAAAGTTGGTTCTT-TCTGGTAAGGGTTTGGAAGGTGTGATTTCGGGGTC 415
Query 460 TTTAGGGGAGTTGACTGAGCTGCGAGTACTTGATCTATCTCGTAACCAGCTTAAAGGCGA 519
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTTAGGCGAGTTGAGTGAGCTGCGAGTACTTGATCTATCTCGTAACCAGCTTAAAGGCGA 475
Query 520 AGTACCAGCGGAGATTTCTAAGTTAGAGCAGCTTCAAGTTCTTGATTTGAGTCATAACCT 579
|||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 476 CTTACCAGCGGAGATTTCCAAGTTAGAGCAGCTTGAAGTTCTTGATTTGAGCCATAATCT 535
Query 580 GTTATCAGGGTCTGTTTTGGGAGTGGTTTCGGGTTTAAAGCTGATTCAGTCGCTGAACAT 639
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 536 GTTGTCAGGGTCGGTTTTGGGAGTGGTTTCTGGTTTAAAGCTGATTCAGTCGCTGAACAT 595
Query 640 TTCGAGCAATTCGCTTAGCGGGAAGTTATCGGATGTTGGAGTGTTTCCTGGTCTTGTGAT 699
||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 596 TTCCAGCAATTCGCTAAGCGGGAATTTATCGGATGTTGGAATGTTTCCTGGTCTTGTGAT 655
Query 700 GCTTAATGTAAGCAACAATTTGTTTGAGGGTGAGATTCATCCTGAACTCTGTAGCTCATC 759
| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 656 GTTTAATGTAAGCAACAATTTGTTCGAGGGTGAGATTCATCCTGAACTCTGCAGCTCATC 715
Query 760 TGGTGGGATACAGGTTCTTGATTTATCGATGAATCGTTTGGTGGGGAATCTTGATGGCTT 819
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 716 TGGTGAGATTCAGGTTCTTGATTTATCGATGAATCGTTTGGTGGGGAATCTTGTTGGCTT 775
Query 820 GTACAACTGCAGCAAATCTATTCAACAGCTCCATATCGACAGCAACAGATTGACGGGCCA 879
||| || |||||||| |||||||| | ||||||| ||||||||||| ||||||| |||||
Sbjct 776 GTATAATTGCAGCAAGTCTATTCAGCGGCTCCATGTCGACAGCAACGGATTGACTGGCCA 835
Query 880 ACTTCCGGATTATCTTTATTCGATCCGGGAGTTGGAGCAACTATCACTCTCTGGAAACTA 939
||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 836 GCTTCCGGATTATCTTTATTCGATCCGGGACTTGGAGCAACTATCAGTCTCTGGGAACTA 895
Query 940 CTTATCCGGAGAGTTAAGCAAGAACTTGAGCAATCTCTCTGGTCTGAAGTCTCTGTTGAT 999
|||||| ||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 896 CTTATCTGGACAGTTGAGCCAGAACTTGAGCAATCTCTCTGGTCTTAAGTCTCTGTTGAT 955
Query 1000 ATCAGAGAACCGGTTTTC-GGATGTAATTCCAGATGTTTTTGGTAACCTCACTCAATTGG 1058
|| |||||||||||||| || |||||||||||||||||||||||| |||||||| |||
Sbjct 956 TTCCGAGAACCGGTTTTCTGG-TGTAATTCCAGATGTTTTTGGTAATCTCACTCAGCTGG 1014
Query 1059 AACACCTCGACGTGAGCTCCAACAAGTTCTCGGGAAGGTTTCCGCCAAGTTTATCCCAAT 1118
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1015 AACACCTCGACGTAAGCTCCAACAAGTTCTCGGGAAGATTTCCGCCAAGCTTATCTCAAT 1074
Query 1119 GCTCGAAGCTGCGGGTTCTTGATCTTAGGAACAACTCGTTATCCGGTTCTATCAATCTTA 1178
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1075 GCTCGAAGCTGCGGGTTCTTGATCTTAGGAACAACTCGTTATCTGGTTCTATCAATCTTA 1134
Query 1179 ACTTCACTGGATTTACCGATCTTTGCGTGCTTGATCTCGCCAGTAATCATTTCTCTGGAC 1238
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1135 ACTTCACTGGATTTACTGATCTTTGCGTGCTCGATCTCGCCAGTAATCATTTCTCTGGAC 1194
Query 1239 CTCTTCCTGATTCCCTTGGCCACTGTCCCAAGATGAAGATCTTGAGTTTGGCGAAAAACG 1298
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1195 CACTTCCTGATTCCCTTGGCCATTGTCCCAAGATGAAGATCTTGAGTTTGGCGAAAAACG 1254
Query 1299 AGTTTC-GCGGCAAAATCCCTGACACCTTCAAGAATCTGCAGTCTCTCTTGTTCCTGTCC 1357
|| ||| ||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 1255 AG-TTCAGCGGCAAAATCCCCGACACCTTCAAGAATCTGGACTCTCTCTTGTTCCTGTCT 1313
Query 1358 TTATCCAACAACAGCTTTGTGGATTTTTCTGAGACAATGAATGTGCTGCAACATTGCAGA 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TTATCCAACAACAGCTTTGTGGATTTTTCTGAGACAATGAATGTGCTGCAACATTGCAGA 1373
Query 1418 AACCTCTCCACTCTTATTCTCTCAAAGAACTTCATCGGCGAGGAAATACCAAACAACGTC 1477
|| |||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1374 AATCTCTCCACTCTTATCCTCTCAAAGAATTTCATCGGCGAGGAAATACCAAGGAACGTC 1433
Query 1478 ACTGGTTTCGACAACCTCGCGATTTTAGCGCTAGGAAATTGCGGTCTTAGAGGTCAGATT 1537
||||||||| ||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1434 ACTGGTTTCAACAACCTCGCGATTTTAGCCCTCGGAAACTGCGGTCTTAGAGGTCAGATT 1493
Query 1538 CCGAGCTGGCTATTGAACTGCAAGAAGCTGGAAGTTCTTGATCTCTCTTGGAATCACTTT 1597
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1494 CCGAGCTGGTTATTGAATTGCAAGAAGCTGGAAGTTCTTGATCTCTCTTGGAATCACATT 1553
Query 1598 TACGGAACTATCCCTCATTGGATTGGTAAGATGGAGAGTTTGTTCTACATAGACTTCTCA 1657
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1554 TACGGAACTATCCCTCATTGGATCGGTAAGATGGAGAGTCTGTTCTACATAGACTTCTCA 1613
Query 1658 AACAACACTTTGACCGGAGCAATCCCGGTAGCCATAACCGAGCTCAAGAACCTAATCCGT 1717
||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |
Sbjct 1614 AACAACACTTTAACCGGAGAAATCCCGGTAGCCATAACCGAGCTCAAGAACTTAATCCAT 1673
Query 1718 CTAAACGGAACCGCTTCTCAGATGACCGA-CTCTTCTGGAATTCCTCTCTACGTAAAGCG 1776
||||| | |||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 1674 TTAAACTGCACCGCTTCTCAGATGACC-ACCTCTTCTGGTATTCCTCTCTACGTAAAGCG 1732
Query 1777 GAACAAGAGCTCCAACGGTCTTCCATATAACCAAGTTTCAAGATTCCCGCCATCTATCTA 1836
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 GAACAAGAGCTCGAGTGGTCTTCCATATAACCAAGTTTCAAGATTCCCGCCATCTATCTA 1792
Query 1837 TTTGAATAATAACCGTCTCAACGGGACGATCTTGCCAGAGATAGGACGTTTGAAAGAGCT 1896
|||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1793 TTTGAACAATAACCGCCTCAACGGGACGATCTTGCCGGAGATCGGACGTTTGAAAGAGCT 1852
Query 1897 TCACATGCTGGACTTGAGCAGGAACAACTTCACTGGGACGATACCTGATTCCATTTCAGG 1956
|||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1853 TCACATGCTGGATTTGAGCAGGAACAACTTCTCCGGGACGATACCTGATTCCATTTCAGG 1912
Query 1957 GCTTGACAATTTGGAGGTTCTTGATTTATCTTACAATCATCTCTACGGTTCGATTCCTCT 2016
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1913 GCTTGACAATTTGGAGGTTCTTGATTTGTCTTACAATCATCTCTACGGTTCGATTCCTCT 1972
Query 2017 GTCTTTTCAGAGTCTCACTTTCTTGTCGAGGTTCAGCGTAGCGTATAACCGTCTCACTGG 2076
||||||||||||||||||||||||||||| |||||| || || ||||| |||||||||||
Sbjct 1973 GTCTTTTCAGAGTCTCACTTTCTTGTCGAAGTTCAGTGTTGCATATAATCGTCTCACTGG 2032
Query 2077 CGCGATTCCATCTGGAGGTCAGTTCTACAGCTTCCCGCACTCAAGCTTCGAAGGAAACTT 2136
||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||
Sbjct 2033 TGCGATTCCATCTGGAGGCCAGTTCTACAGCTTCCCACACTCCAGCTTTGAAGGAAATTT 2092
Query 2137 AGGACTTTGTCGCGCGATTGATTCTCCTTGCGATGTTCTGATGAGTAACATGTTGAATCC 2196
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 GGGGCTTTGTCGCGCGATTGATTCTCCTTGCGATGTTCTGATGAGTAACATGTTGAATCC 2152
Query 2197 GAAAGGTTCTTCGCGTAGGAATAACAATGGCGGAAAG-TTCGGGAGAAGCAGCATTGTTG 2255
||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2153 GAAAGGTCCTTCGCGTAGTAATAACAATGGCGG-AAGATTCGGGAGAAGCAGCATTGTTG 2211
Query 2256 TACTTACCATAAGTCTAGCCATTGGGATTACTCTACTTCTTTCTGTTATTCTGTTAAGGA 2315
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2212 TACTTACCATAAGTCTAGCCATTGGGATTACTCTACTACTTTCTGTTATTCTGTTAAGAA 2271
Query 2316 TTTCAAGAAAAGATGT-GGATGATCGAATCAATGACGTTGATGAGGAGACTATCAGCGGG 2374
||||||||||||| | |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2272 TTTCAAGAAAAGA-CTCGGATGATCGAATTAATGACGTTGATGAGGAAACTATCAGCGGT 2330
Query 2375 GTTTCGAAAGCTCTCGGGCCATCAAAGATTGTGCTTTTCCATAGCTGTGGATGTAAAGAT 2434
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2331 GTTCCGAAAGCTCTCGGGCCATCAAAGATTGTGCTTTTCCATAGCTGTGGATGCAAAGAT 2390
Query 2435 CTAAGTGTTGAGGAGTTGTTGAAGTCTACGAACAATTTCAGCCAGGCTAACATTATAGGA 2494
|| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 2391 CTGAGTGTTGAGGAGTTGTTGAAATCTACAAACAATTTCAGCCAGGCAAACATTATAGGA 2450
Query 2495 TGTGGCGGATTTGGTCTTGTGTACAAAGCTAATTTTCCCGATGGCTCGAAAGCAGCAGTC 2554
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 2451 TGTGGTGGATTTGGTCTTGTGTACAAAGCAAATTTTCCCGATGGCTCAAAAGCAGCGGTC 2510
Query 2555 AAGAGGCTTTCTGGTGACTGTGGGCAGATGGAACGTGAATTCCAAGCGGAAGTTGAAGCA 2614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2511 AAGAGGCTTTCTGGTGACTGTGGGCAGATGGAACGTGAATTCCAAGCGGAAGTTGAAGCA 2570
Query 2615 TTGTCTCGAGCGGAACATAAGAATCTAGTCTCTCTTCAAGGCTACTGCAAGCATGGAAAC 2674
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2571 TTGTCGCGAGCGGAACACAAGAATCTAGTCTCTCTTCAAGGCTACTGCAAGCATGGAAAC 2630
Query 2675 GATAGGCTGCTTATTTACTCGTTTATGGAGAATGGAAGTTTGGATTATTGGCTGCATGAG 2734
||| |||||||||| |||||||| ||||| || ||||| ||||| |||||||| || |||
Sbjct 2631 GATCGGCTGCTTATCTACTCGTTCATGGAAAACGGAAGCTTGGACTATTGGCTACACGAG 2690
Query 2735 CGGGTAGATGGGAATATGACTCTTATATGGGATGTGAGATTGAAGATAGCTCAAGGCGCA 2794
||||| || |||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 2691 CGGGTTGACGGGAATATGACTCTCAAATGGGATGTGAGATTGAAGATAGCACAAGGCGCG 2750
Query 2795 GCGCGAGGGCTTGCTTACTTGCATAAAGTCTGTGAACCTAATGTTATACATAGGGATGTG 2854
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2751 GCGCGCGGGCTTGCTTACTTGCATAAAGTCTGTGAACCAAATGTTATCCATAGGGATGTG 2810
Query 2855 AAGTCTAGTAACATTTTGTTAGATGAGAAGTTTGAAGCTCATCTTGCGGATTTTGGGTTA 2914
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2811 AAGTCGAGTAACATTTTGTTAGATGAGAAGTTTGAAGCTCATCTTGCGGATTTCGGGTTA 2870
Query 2915 GCGAGGTTGCTTAGGCCGTATGATACTCACGTGACGACTGATTTGGTTGGGACATTGGGT 2974
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2871 GCGAGGTTGCTTAGGCCGTACGATACTCACGTGACGACTGATTTGGTGGGGACATTGGGT 2930
Query 2975 TATATTCCTCCTGAGTATAGCCAGTCTTTGATTGCAACATGTAGAGGAGACGTTTACAGT 3034
|||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 2931 TATATTCCTCCTGAATATAGCCAGTCTCTGATTGCAACATGTAGAGGAGATGTTTACAGT 2990
Query 3035 TTTGGCGTTGTGCTTTTGGAGCTAGTTACGGGTCGTAGACCTGTAGAAGTCTGTAAAGGG 3094
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2991 TTTGGCGTTGTGCTTTTGGAGCTAGTTACAGGTCGTAGACCTGTGGAAGTCTGTAAAGGG 3050
Query 3095 AAAAGTTGCAGAGATTTGGTGTCTCGGGTGTTTCAAATGAAGGCTGAGAAGCGTGAAGCT 3154
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 3051 AAAAGTTGCAGAGATTTGGTGTCTCGGGTGTTTCAAATGAAGGCCGAGAAGCGCGAGGCT 3110
Query 3155 GAGCTTATCGATACAACAATACGCGAAAATGTGAACGAGAGAACGGTTTTGGAGATGTTG 3214
||||||||||||||||||||||||||||| || ||||||| ||||||||| |||||||||
Sbjct 3111 GAGCTTATCGATACAACAATACGCGAAAACGTCAACGAGAAAACGGTTTTAGAGATGTTG 3170
Query 3215 GAGATTGCTTGCAAATGCATTGATCATGAGCCTAGAAGGAGACCACTGATCGAAGAAGTC 3274
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 3171 GAGATTGCTTGCAAATGCATTGATCATGAGCCTAGAAGGAGACCGTTGATCGAGGAAGTC 3230
Query 3275 GTTACTTGGCTTGAAGATCTTCCTATGGAGTCTGTTCAACAACAATGAAAAACTCCTCTA 3334
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||
Sbjct 3231 GTTACTTGGCTTGAAGATCTTCCCATGGAGTCTGTTCAACAACAATGAAAA-CTCTTTTA 3289
Query 3335 TAAGTAGCTTTCTTAGTTTCTT-GTGAATGAAA-GAGTGTAGATCACTGGTTTTAATCTA 3392
|||| ||||||||||||||||| || |||||| |||||||||||||| |||||||||||
Sbjct 3290 TAAGAAGCTTTCTTAGTTTCTTTGTTAATGAAGTGAGTGTAGATCACTAGTTTTAATCTA 3349
Query 3393 AGAAACTTGGGGTATACATGTAAAGCAAAGAACtttttt 3431
||||||||| |||||||||||||||||| ||||||||||
Sbjct 3350 AGAAACTTGTGGTATACATGTAAAGCAATGAACTTTTTT 3388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129814381503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5