BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53895.1

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg917052 jgi|Araly1|917052|Al_scaffold_0008_1803                    484    2e-136
  Ahg495469 jgi|Araly1|495469|fgenesh2_kg.8__1285__AT5G53900.2        82.4    3e-15 


> Ahg917052 jgi|Araly1|917052|Al_scaffold_0008_1803
Length=399

 Score =  484 bits (262),  Expect = 2e-136
 Identities = 318/345 (92%), Gaps = 4/345 (1%)
 Strand=Plus/Plus

Query  106  CAC-CTCT-CAAGGAAGCAATGGAGGTGGAGAGTCATCTGCGAGTATGAACGAGGCGAGA  163
            ||| |||| || ||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct  55   CACTCTCTCCAGGGAAGCAATGGAGCTGGAGAGTCATCTGCGAGTATGAACGAGGTGAAA  114

Query  164  CAAGAGGCGATGGGAACAAGCACAGATGCTAAGGCACCTGATGTTTCACTCAGCTATGCA  223
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  115  CAAGAGGCGATGGGAACAAGTACAGATGCTAAGGCACCTGATGTTTCACTCAGCTATGCA  174

Query  224  GCGGATACTGCGAAAGAAGGGTTAAAACAAGCCATGGATAAAGCCAAGAAAAAGAGCGGA  283
            |||||||||||||||||||||||||||| ||||| ||||  ||||||| || ||||||||
Sbjct  175  GCGGATACTGCGAAAGAAGGGTTAAAACGAGCCACGGATTTAGCCAAGGAAGAGAGCGGA  234

Query  284  GACGCTGCCACGGAGGAGGCAGCAACGGTTGCAGGCGGCGAGGACGAGAGTGAAGAGAAT  343
            ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct  235  GACGCTGCCACAGAGGAGGCAGGAACGGTTGCAGGCGGCGAGGAGGAGAGTGAAGAGAAT  294

Query  344  GTGACAGTGGGTGAGATAGGAACTCTTAA-AGGGAAAAATCAATCTTCAAGCTGAAAAAT  402
             || |||||||||||||||||||| |||| |||| |||||||||||| ||||||||| ||
Sbjct  295  ATGCCAGTGGGTGAGATAGGAACTGTTAAGAGGGCAAAATCAATCTTGAAGCTGAAATAT  354

Query  403  ATGTCTCTACTCTGTATGTTAGGACTTAAAA-GCCAAATCTATAA  446
             ||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct  355  GTGTCTGTACTCTGTATGTTAGGACTTAAAAAGCCAAATCAATAA  399


> Ahg495469 jgi|Araly1|495469|fgenesh2_kg.8__1285__AT5G53900.2
Length=1630

 Score = 82.4 bits (44),  Expect = 3e-15
 Identities = 52/56 (93%), Gaps = 0/56 (0%)
 Strand=Plus/Minus

Query  430   AAAAGCCAAATCTATAACGTGTTTTTAAAGTATCTTCAAATGTTAAAAGAGTGTTG  485
             |||||||||||| |||| ||| |||||||||||||||||||||||||||||| |||
Sbjct  1630  AAAAGCCAAATCAATAATGTGCTTTTAAAGTATCTTCAAATGTTAAAAGAGTTTTG  1575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17589726529


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5