BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53895.1 Length=485 Score E Sequences producing significant alignments: (Bits) Value Ahg917052 jgi|Araly1|917052|Al_scaffold_0008_1803 484 2e-136 Ahg495469 jgi|Araly1|495469|fgenesh2_kg.8__1285__AT5G53900.2 82.4 3e-15 > Ahg917052 jgi|Araly1|917052|Al_scaffold_0008_1803 Length=399 Score = 484 bits (262), Expect = 2e-136 Identities = 318/345 (92%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 106 CAC-CTCT-CAAGGAAGCAATGGAGGTGGAGAGTCATCTGCGAGTATGAACGAGGCGAGA 163 ||| |||| || ||||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 55 CACTCTCTCCAGGGAAGCAATGGAGCTGGAGAGTCATCTGCGAGTATGAACGAGGTGAAA 114 Query 164 CAAGAGGCGATGGGAACAAGCACAGATGCTAAGGCACCTGATGTTTCACTCAGCTATGCA 223 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 115 CAAGAGGCGATGGGAACAAGTACAGATGCTAAGGCACCTGATGTTTCACTCAGCTATGCA 174 Query 224 GCGGATACTGCGAAAGAAGGGTTAAAACAAGCCATGGATAAAGCCAAGAAAAAGAGCGGA 283 |||||||||||||||||||||||||||| ||||| |||| ||||||| || |||||||| Sbjct 175 GCGGATACTGCGAAAGAAGGGTTAAAACGAGCCACGGATTTAGCCAAGGAAGAGAGCGGA 234 Query 284 GACGCTGCCACGGAGGAGGCAGCAACGGTTGCAGGCGGCGAGGACGAGAGTGAAGAGAAT 343 ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 235 GACGCTGCCACAGAGGAGGCAGGAACGGTTGCAGGCGGCGAGGAGGAGAGTGAAGAGAAT 294 Query 344 GTGACAGTGGGTGAGATAGGAACTCTTAA-AGGGAAAAATCAATCTTCAAGCTGAAAAAT 402 || |||||||||||||||||||| |||| |||| |||||||||||| ||||||||| || Sbjct 295 ATGCCAGTGGGTGAGATAGGAACTGTTAAGAGGGCAAAATCAATCTTGAAGCTGAAATAT 354 Query 403 ATGTCTCTACTCTGTATGTTAGGACTTAAAA-GCCAAATCTATAA 446 ||||| |||||||||||||||||||||||| |||||||| |||| Sbjct 355 GTGTCTGTACTCTGTATGTTAGGACTTAAAAAGCCAAATCAATAA 399 > Ahg495469 jgi|Araly1|495469|fgenesh2_kg.8__1285__AT5G53900.2 Length=1630 Score = 82.4 bits (44), Expect = 3e-15 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 430 AAAAGCCAAATCTATAACGTGTTTTTAAAGTATCTTCAAATGTTAAAAGAGTGTTG 485 |||||||||||| |||| ||| |||||||||||||||||||||||||||||| ||| Sbjct 1630 AAAAGCCAAATCAATAATGTGCTTTTAAAGTATCTTCAAATGTTAAAAGAGTTTTG 1575 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17589726529 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5