BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53900.2
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495469 jgi|Araly1|495469|fgenesh2_kg.8__1285__AT5G53900.2 2379 0.0
> Ahg495469 jgi|Araly1|495469|fgenesh2_kg.8__1285__AT5G53900.2
Length=1630
Score = 2379 bits (1288), Expect = 0.0
Identities = 1548/1664 (93%), Gaps = 55/1664 (3%)
Strand=Plus/Plus
Query 1 GTCGCCGGGATTTCGATTAACATAATTCTGTTTCACTaaaaaagactcagaagaaaaaag 60
|||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1 GTCGCCGGGATTTCGATTAACATAATTCTG-TTCACTAAAAAAGACTCTGAACAAAAAAA 59
Query 61 aaaaagaaCAGTAGTGAGAGAAAGT---A-AGAG-CGAG--TCTGTGGTTGACAAAACTC 113
||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||
Sbjct 60 AAAAAGAACAGTAGTGAGAGAAAGTAAGAGAGAGATGAGACTCTGTGGTTGACAAAACTC 119
Query 114 TTTTGCTCTCGCAGAGAAAAGATAACTTAttttt-ttttCTTTAAAATATTTGGAAACAA 172
||||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 120 TTTTGTTCTCACAGAG-AAAGATAACTTATTTTTCTTTTCTTTTAAATATTTGGAAACAA 178
Query 173 AAGAGACTCTGTCT---G-AAG--AAAG-C-TAAAGACTTGTGATGATTCTTGACAAAAG 224
|||||||||||||| | ||| |||| | |||||||||||||||||||||||||||||
Sbjct 179 AAGAGACTCTGTCTGAAGAAAGCTAAAGACTTAAAGACTTGTGATGATTCTTGACAAAAG 238
Query 225 AAACTGTGTCTTTGGAGAACTCTGAAGTAagagagacagagaaagacaaagagagagaCA 284
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 239 AAGCTGTGTCTTTGGAGAACTTTGAAGT-AGAGAGACAGAGAAAGACAAAGAGAGAGACA 297
Query 285 TGGTGGGCTCAGGAGTTGGAGGAGGAGATAGAAGCAAAGATGCTGTAGGAATGATGGCAC 344
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGGTGGGCTCAGGAGCT---GGAGGAGATAGAAGCAAAGATGCTGTAGGAATGATGGCAC 354
Query 345 TTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGA 404
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 355 TTCATGAAGCACTTAGAAGCGTCTGTCTTAACTCCGACTGGATTTACTCTGTTTTCTGGA 414
Query 405 CCATTCGTCCCCGACCGAGGGTCCGTGGTGGTAATGGCTGCAAGATTGGTGATGAAAGTG 464
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 415 CCATTCGTCCCCGACCGAGGGTCCGTGGTGGTAATGGTTGCAAGATTGGTGACGAAAGTG 474
Query 465 GCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTGGTGGAGGAAGAAGTGAAGATCTTT 524
|||||||||||||||||||||||||||||||||||||| | | || |||| ||
Sbjct 475 GCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTGGT----G--G-AG-GAAG----TT 522
Query 525 GTCTGGAAACAGACATTGAAGGTCATGAAGAAGATCTTGTCAGAAAAGCTTTCAGCAAGA 584
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 523 GTCTGGAAACAGACATTGAAGG---TGAAGAAGATCTTGTCAGAAAAGCTTTCAGCAAAA 579
Query 585 TGTCCATTCAGTTATATAATTATGGAGAAGGATTGATGGGTAAAGTTGCTTCTGATAAAT 644
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TGTCCATACAGTTATATAATTATGGAGAAGGATTGATGGGTAAAGTTGCTTCTGATAAAT 639
Query 645 GTCACAAGTGGGTTTTCAAAGAACCATCTGAATCTGAACCAAATCTTGCTAATTACTGGC 704
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GTCACAAGTGGGTATTCAAAGAACCATCTGAATCTGAACCAAATCTTGCTAATTACTGGC 699
Query 705 AAAGTTCTTTTGATGCTCTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAGA 764
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 700 AGAGTTCTTTTGATGCTCTTCCTCCAGAATGGACCGACCAATTCGAATCAGGAATCCAGA 759
Query 765 CAATTGCTGTGATTCAAGCTGGACATGGTCTGTTACAGCTAGGTTCTTGCAAGATTATTC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CAATTGCTGTGATTCAAGCTGGACATGGTCTGTTACAGCTAGGTTCTTGCAAGATTATTC 819
Query 825 CAGAAGATCTTCATTTTGTGCTAAGGATGAGGCAAATGTTTGAATCAATTGGTTACAGAT 884
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 820 CAGAAGATCTTCATTTTGTGCTGAGGATGAGGCAAATGTTTGAATCAATTGGTTATAGAT 879
Query 885 CAGGTTTTTACCTCTCACAGCTCTTCTCTTCAAACCGAACCGCGACT-C-C-ATCTTCTT 941
|||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||||
Sbjct 880 CAGGTTTTTACCTCTCGCAGCTCTTCTCTTCAAACCGAACCGCGACTACTCCATCTTCTT 939
Query 942 CCACGGTTCCAAACCAGATACCTCAGTCTCAAGGTTTTAACTGGGGATCACACTCACCTT 1001
| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 940 CTTCGGTTCCAAACCAGATACCTCAGTCTCAAGCTTTTAACTGGGGATCACACTCTCCTT 999
Query 1002 TGTTACCTTCCCCTAGCTTTCAGAACCAACTACCTGCTTCAGCTAGATTCGGTTTCCTTC 1061
|||||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||
Sbjct 1000 TGTTACCTTCCCCTAGTTTTCAGAACCAACTACCTGCATCAGCCCGATTCGGTTTTCTTC 1059
Query 1062 AAGATAACAATGTTCCTCCTCAGATGCTTCCTCCAATGGAAGAGCATGAAGACGACATCA 1121
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1060 AAGATACCAATGTTCCTCCTCAGATGCTTCCTCCAATGGAAGAACACGAAGACGACATCA 1119
Query 1122 AATGGCCTAATGGTTTGTCGTTGTTCAATGCGTTGACTGGACGTGCAGATGAAGCTAGTA 1181
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1120 AATGGCCCAACGGTTTGTCGTTGTTCAATGCGTTGACTGGCCGTGCAGATGAAGCTAGTA 1179
Query 1182 GGCTTTTGTTTAACCAGGAGCAGAACCCGATGAATGTCGAAAACCAGAACGAGTTCTTGA 1241
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1180 GGCTTTTGTTTAACCAGGAGCAGAACCCGATGAATGTCGAAAATCAGAACGAGTTCTTGA 1239
Query 1242 ACCTTGAAGGTCATCATCCTAACAAGTTTAGAAGAAGCTATACATTGCCAGCTCGAATGG 1301
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1240 ATCTTGAAGGTCATCATCCTAACAAGTTTAGAAGAAGCTATACATTGCCAGCTAGAATGG 1299
Query 1302 ATTCTTCGTCATCATCAACCTCGCTTGATCAGCAACAACCACTGGAGTTTAGGAACAATA 1361
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1300 ATTCTTCTTCATCATCTACCTCGCTTGATCAGCAACCACCACTGGAGTTTAGGAACAATA 1359
Query 1362 ACTCTGGAAGCAACTCGGGTTTGTTCCCTGACGTTATGGAGACGTTTTTGAGGTGATTGA 1421
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1360 ACTCTGGAAGCAACTCGGGTTTGTTCCCTGACGTTATGGAGACGTTCTTGAGGTGATTGA 1419
Query 1422 CATGTTCAAGATTCAG-GTTTAAGGACAGATTAAACTAAAAGCTCTCGATGCTAGTTATT 1480
|||||||||||||| | ||| |||||||||| |||| || ||| | |||||||||| ||
Sbjct 1420 CATGTTCAAGATTCTGAGTT-AAGGACAGATAAAACGGAATGCTTTGGATGCTAGTTTTT 1478
Query 1481 AGCTTATGCTTGT-TATAAATACATGAAACTCTCtgttcgttgtttcttccttcttgttg 1539
||||| ||||| | |||||||| ||||| || | | || |||||||||| ||||
Sbjct 1479 AGCTTTTGCTT-TCTATAAATATATGAA-CTATGT-TT-GTTGTTTCTT-------GTTG 1527
Query 1540 ttgttgttgttattgtaccatattgtctgattgtttctCCTTTTATGTCAACACTCTTTT 1599
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1528 TTGTTGTTGTTAT-GTACCATATTGTCTGATTGTTTCTCCTTTTATGTCAAAACTCTTTT 1586
Query 1600 AACATTTGAAGATACTTTAAAAACACGTTATAGATTTGGCTTTT 1643
|||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 1587 AACATTTGAAGATACTTTAAAAGCACATTATTGATTTGGCTTTT 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5