BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53910.1
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950009 jgi|Araly1|950009|scaffold_801896.1 933 0.0
> Ahg950009 jgi|Araly1|950009|scaffold_801896.1
Length=732
Score = 933 bits (505), Expect = 0.0
Identities = 635/697 (91%), Gaps = 11/697 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCTACTCCTGTATTCAACTACCATATTGATGTCAATCCTGAACGCAAAAAGATT 60
|||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 23 ATGGAAGCTACTCCAGAATTCAACTACCAAATTGATGTCAATCCTGAACGCAAAAAGATT 82
Query 61 GGCACAATCCAAGTCTATGT-AAGTTTCGTCGGATCAGCCAACATGTC-GCCGATACTAA 118
|||||||||||||||||| | |||||||||| || ||||||||||| | |||||||||||
Sbjct 83 GGCACAATCCAAGTCTAT-TCAAGTTTCGTCAGACCAGCCAACATG-CAGCCGATACTAA 140
Query 119 CCCGGTCTAACTTCTCATGTTCATTACCTGCCAATGAATTAACTGACGACGAAGATTCTC 178
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 141 CCCGGTCGAACTTCTCATGTTCATTACCTGCCAATGAATTCACTGACGACGAAGATTCTC 200
Query 179 CCCACAAACAAAGACTCTATTACTTCTTAACAGATTCAGCAGTTGATTCACAAGATGCTT 238
|||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||||
Sbjct 201 CCCACAAACAAAGACTCTATTACTTCTTAAAAGATTCAGGAGTTGATGCAGAAGATGCTT 260
Query 239 ACACGTTAATACTAAAACTCACTCAACTTGCACGTGATTTAACTTCTAATTCGTTTGAAT 298
||||||||||| |||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 261 ACACGTTAATAATAAAACTCACTCAACTTGCATGTAAAGTAACTTCTAATTCGTTTGAAT 320
Query 299 ACTGTCCACGTTATGCTTTGTCAGTGTGGTTGACTCTTGATGTGGCTCCTTTGAATGAAT 358
| ||| ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||
Sbjct 321 ATTGTTCACGTTATGCTTTGTTATTGTGGTTGACTCTTGATGTGGCTCCTTCGAACGAAT 380
Query 359 ATGAGAGGAATAGCGAGTATAGACCCGCGAGCAATTTAAGGGTCGGA-GCCTTGAGCAGG 417
||||||||||||||| || ||||||||||||||| || || || || ||||||||||||
Sbjct 381 ATGAGAGGAATAGCGCGTTTAGACCCGCGAGCAAGTTGAGAGT-TGAGGCCTTGAGCAGG 439
Query 418 AGAATATACAAGAGGAAACAAAAGACCAGCTCTATTGCTAACAAGAGCACAAGATACATG 477
||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||| |
Sbjct 440 AGAATATACAAGAGGAAACGAAAGACCAGCTCTATTGCTAACCAGTGCAAAAGATACAAG 499
Query 478 AGAAAACGAGAGACCTA-TTCTAGTGGTGAGTACAAATGCGCAATTTGTTTTCAGGAGTT 536
||||||| ||||| | | ||||||||| | |||| ||| |||||||||||||| ||||
Sbjct 500 AGAAAACAAGAGAGC-AGCTCTAGTGGT--G-ACAAGTGCACAATTTGTTTTCAGAAGTT 555
Query 537 TAAAACCGGACGAGAAGTTGCTACTTTACTTTGTGGTCATGAATTTGACAATAAGTGTAT 596
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GAAAACCGGACAAGAAGTTGCTACTTTACTTTGTGGTCATGAATTTGACAATAAGTGTAT 615
Query 597 TATGGAATGGTTTAAGGTTCGCTACAATTGTCCATTGTGTCGCTTCGAATTACCACGTGA 656
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||
Sbjct 616 TATGGAATGGTTTAAGGTTCGCCACAATTGTCCATTGTGTCGCTTCGAGTTACCACCTGA 675
Query 657 AGATGATCATATTCCTCAAAGAACTACAGATTTATAA 693
| ||||||| |||||||| |||||||| ||| |||
Sbjct 676 ACATGATCAGGTTCCTCAACTAACTACAGTTTTCTAA 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25466108556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5