BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53920.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495472 jgi|Araly1|495472|fgenesh2_kg.8__1288__AT5G53920.1 1847 0.0
> Ahg495472 jgi|Araly1|495472|fgenesh2_kg.8__1288__AT5G53920.1
Length=1287
Score = 1847 bits (1000), Expect = 0.0
Identities = 1205/1302 (93%), Gaps = 21/1302 (2%)
Strand=Plus/Plus
Query 1 ATGTTAGCTTGGAATTTCATCAAACACTTTCCGTGCAAGAATCTCTCCCGCCATATCCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTAGCTTGGAATTTCATCAAACACTTTCCGTGCAAGAATCTCTCCCGCCATATCCTC 60
Query 61 AGAGACAGCAGAGTCAGACCTCTCTGcttcttcacttcttctactcctccatcctccttt 120
|||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 61 AGAG--A-CAGAGTCAGACCTCTCTGCCTCTTCACTTTTTCTACTCCTCCATCCTCCTTT 117
Query 121 tcaatct-ttgcgtctctctctacttcttcttcttcctcctcctcatcttcgtgcttcAC 179
||||| | ||| |||||||| | | |||||||| || || |||||||||||||||||
Sbjct 118 TCAAT-TACTGC--CTCTCTCT-CCTATTCTTCTT-CT--TCATCATCTTCGTGCTTCAC 170
Query 180 TGATGAGTCTTTCGCTGCACCTTACCTCTCAGTTCGTATCCACTGTCCAAAACATGCCCT 239
||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct 171 TGATGAGTCTTTCACTGCACCTTATCTCTCAGTTCGTATACACTGTCCAAAACATGTCCT 230
Query 240 CGATCCATTCTCGGAGGCACTTTTGTGTTTTGGAGCAAGCTCTGTAGCTGTAGATGAAGC 299
|||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 231 CGATCCATTCTCGGAGGCGCTCTTGTGTTTTGGAGCAAGCTCTGTAACTGTAGATGAAGA 290
Query 300 CATCGAAGAAG--CCGACCAAGATGAGACTTCTCTTGCTTCAAAAGAGATATGTATAGAA 357
|||||| |||| || | || | ||||||||||||| ||||||||||||||||||
Sbjct 291 CATCGACGAAGATGCG-GC-TTCTGGGTCTTCTCTTGCTTCCAAAGAGATATGTATAGAA 348
Query 358 TCAATATTTCCAGTGCATGAAGAGGTGAAAATGTGCATTTCACAAGCTGCAAATTCCATA 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 349 TCAATATTTCCAGTGCATGAAGAGGTGAAAATGTGCATTTCACAGGCTGCAAATTCCATA 408
Query 418 GGCTTGAAAGAGATACCCAAATTCAAAGTTGAAATGGGAGATGAACTTGACTGGATTACC 477
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 409 GGCTTGAAAGAGATACCCAAATTCAAAGTTGAAATAGGAGATGAACAAGACTGGATTACC 468
Query 478 AAAAACCAGGATTTGTTTCAGCCTGTTGAAATCGCCGAGA-GACTTTGGATTGTACCTGA 536
||||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 469 AAAAACCAGGAATTGTTTCAGCCTGTTGAAATTGCCGAGATG-CTTTGGATTGTACCTGA 527
Query 537 GTGGACATCTCCTCCTGTCGCTGAAGCGGTAAACATAATTCTGAACCCTGGATTTGCGTT 596
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GTGGACATCTCCTCCTGTCACTGAAGCGGTAAACATAATTCTGAACCCTGGATTTGCGTT 587
Query 597 TGGGACTGGAGAACATCCTACTACTAAGCTGTGTCTATTGCTTCTACAAAGTTTGATAAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TGGGACTGGAGAACATCCTACTACTAAGCTGTGTCTATTGCTTCTACAAAGTTTGATAAA 647
Query 657 AGGCGGAGAAGCTTTCCTCGACTATGGTACCGGTTCAGGAATACTTGCAATTGCAGCCCT 716
|||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 648 AGGCGGGGAAGCATTCCTCGACTATGGTACTGGTTCAGGAATACTTGCAATCGCAGCCCT 707
Query 717 CAAGTTTGGTGCTGCATCATCCGTTGGTGTTGATATTGATCCTCTAGCAATAAACTCTGC 776
||||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||| |
Sbjct 708 CAAGTTTGGTGCTGCATCATCTGTTGGCGTTGATATTGATCCCCTGGCAATAAAATCTAC 767
Query 777 AATTCATAATGCAGCTCTGAACAACATTCCGTTGGAGAAACTGGAGCTGCACCTTGCACC 836
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 768 TCGTCATAATGCAGCTCTGAACAACATTCCTTTGGAGAAACTGGAGCTGCACCTTGCACC 827
Query 837 TATTGAGAATAGCTCTTCTGGAAGAGAAATACCATTGCAAAAGGAACAGTTTGATGTAGT 896
| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct 828 AAGTGAGAATAGCTCTTCTGGAAGAGAAATACCACTGCAAAAACAACAGTTTGATGTGGT 887
Query 897 CATTGCAAACATACTCTTGAACCCGGTTATG-AATCTGGCGGATCATATCCTTTCATTCG 955
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 888 CATTGCAAACATACTCTTAAACCCGGTTATGGAA-CTGGCGGATCATATCCTTTCATTCG 946
Query 956 TGAAACCTGGGGCAACCATTGGCATTTCTGGTATCTTATCTGAACAGCTTCCAAATGTAA 1015
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 947 CAAAACCTGGGGCAACCATTGGCATTTCTGGTATCTTATCTGAACAGCTGCCAAATGTAA 1006
Query 1016 GAGAACGGTACTCTCCCTTCTTGGAGGACATTTCTGTAGCCACAATAGGTGATTGGGTAT 1075
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1007 TAGAACGGTACTCTCCCTTCTTGGAGGACATTTCTGTAGCTACAATAGGTGATTGGGTTT 1066
Query 1076 GCATGAGTGGTACCAAGAAAGAGGA-GTTTATTGATAACTAATCATTTCTTCAGTGTTAT 1134
||||||| ||||||||||||| ||| |||||||||||| ||||| ||||||||||||||
Sbjct 1067 GCATGAGCGGTACCAAGAAAG-GGAAGTTTATTGATAATTAATCGCTTCTTCAGTGTTAT 1125
Query 1135 ATCAGAAAACAGACAATAACATAAAAAGCACTAGTAAAGCAAAGGTAAGAACAAAAGTGT 1194
|||||||||||||||||||||| ||||||| ||| ||||| |||| |||||||||||||
Sbjct 1126 ATCAGAAAACAGACAATAACATCAAAAGCAGTAGCAAAGCGAAGGCAAGAACAAAAGTGC 1185
Query 1195 CTAATCATCAGACATTAAGAACATATCAGCCTTAATGGAGTTGTGTAAGAGGTTACAACT 1254
||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||
Sbjct 1186 CTAATCATCAGACATTAAGAACAGATCAGCCTTAATAGAGTTGTGTAAGAGGCTACAACT 1245
Query 1255 ACACATGATATGAAACTTAATGAACTCTTCATTGTTGTATTC 1296
||||| || | ||||||||||| ||||||||||| ||| |||
Sbjct 1246 ACACAGGACACGAAACTTAATGTACTCTTCATTGATGTGTTC 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5