BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53930.1
Length=1889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950012 jgi|Araly1|950012|scaffold_801899.1 2169 0.0
> Ahg950012 jgi|Araly1|950012|scaffold_801899.1
Length=1627
Score = 2169 bits (1174), Expect = 0.0
Identities = 1493/1639 (91%), Gaps = 53/1639 (3%)
Strand=Plus/Plus
Query 141 TACAATGGGCAAATCTTCATCGTCCTCAAAG---AT---A-A-T-CAAAGATTCGTCTAA 191
||||||||| ||||||||||||||||||||| || | | | |||||||||||||||
Sbjct 17 TACAATGGGGAAATCTTCATCGTCCTCAAAGATAATCAAACATTCCAAAGATTCGTCTAA 76
Query 192 TAAGTTGCGATCGGT---GAAGAAGAAGAAGAGTAAGAGAAACAAATCAAAGAAGATTCG 248
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TAAGTGGCGATCGGTGAAGAAGAAGAAGAAGAGTAAGAGAAACAAATCAAAGAAGATTCG 136
Query 249 TCGGATTAAAGATGAGAGTGAATCAAGTGGTTCAGATTCCTCTTTGTATTCTAGTTCAGA 308
||||||| || | ||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 137 TCGGATT-AA-A-GAGAGTGAATCTAGTGGTTCTGATTCTTCTTTGTATTCTAGTTCAGA 193
Query 309 AGATGATTACAGGAGAAAGAAGAAGCGTAGATCTAAATTGAGTAAGAAGAGGTCACGGAA 368
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 194 AGATGATTACAGGAGAAAGAAGAAGCGTAGATCTAAATTGAGCAAGAAGAGGTCACGGAA 253
Query 369 GAGGTACTCTAGTAGTGAGAGTGATGATGA-TA-G-TGATGATGA---TCGTCTTTTaaa 422
|||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||
Sbjct 254 GAGGTACTCTAGTAGTGAGAGTGATGATGACGATGATGATGATGATTCTCGTCTTTTAAA 313
Query 423 gaaaaagaaaagatctaagaggaaggatgaaaacgtagggaagaagaagaagaaagttgt 482
||||||||||||||| |||||||| || ||| | ||||||||||||||||||||||||||
Sbjct 314 GAAAAAGAAAAGATCGAAGAGGAAAGACGAATATGTAGGGAAGAAGAAGAAGAAAGTTGT 373
Query 483 gtcaagaaagagacgtaagagagaTTTGAGTTCAAGCTCTACAAGTAGTGAGCAGAGTGA 542
| |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 374 TTTAAGAAAGAAACGTAAGAGAGATTTGAGTTCTAGCTCGACTAGTAGTGAGCAGAGCGA 433
Query 543 TAATGACGGTAGTGAGAGTGATGATGGGAAGAGATGGTCTAGGGATAGAGGAAGAAGACT 602
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 434 TAATGACGGTAGTGAGA--G-TGATGGGAAGAGATGGTCTAGGGATAGAGGAAGAAGACT 490
Query 603 TGGTAAGGTTAAGGATTCCCGGAGTAGAAGTAGAGATGAGTTGGAAGGAGAGAGTGAAGA 662
|||| ||||| | ||| | ||||||||||||||||||| |||||||||||||||||||||
Sbjct 491 TGGTGAGGTTGATGATGCGCGGAGTAGAAGTAGAGATGGGTTGGAAGGAGAGAGTGAAGA 550
Query 663 ACCTGATGAATGCTGGCAAGGGGAAGATGAAGTTATACCTGAGAAGAATCCTAGAAGGCT 722
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 551 ACCTGATGAATGCTGGCAAGTGGAAGGTGAAGTTATACCTGAGAAGAATCCTAGAAGGCT 610
Query 723 TAAATCGATTGTTGTTGTATCGTATAATTATGGGAATGGTGAGAGAAAGGAAGAAGATGA 782
||||||||||||||||||||| |||| |||||| ||| |||||| ||||||||||||||
Sbjct 611 TAAATCGATTGTTGTTGTATCATATAGTTATGGCCATGATGAGAGCAAGGAAGAAGATGA 670
Query 783 CCGTGATGTCTATATGACACGCGGTGGTGGCAATAGAGAGTTAGGATATAGTGAGGACTC 842
||| ||||||||||||||| |||||||| ||||||||||| ||| |||||||||| ||
Sbjct 671 CCGAGATGTCTATATGACATGCGGTGGT---AATAGAGAGTTGGGACATAGTGAGGAATC 727
Query 843 TGATGAGATG-GATGGTGAATCTATTGACTCTTATTCTAGAATTCGTGCTGATGACAACG 901
|||||||| | ||||||||| ||| | ||| |||||||||| |||||||||||||||||
Sbjct 728 TGATGAGA-GAGATGGTGAAACTACCGTCTCCTATTCTAGAACTCGTGCTGATGACAACG 786
Query 902 GATTTGGGGAATATAATAAATCT-GAAACTAGCA-AAGTTT-CTCATACAGACAATAGCT 958
|| || || | | | | | | | | | | ||||| | | | || ||||||
Sbjct 787 GACTT----AA-A-ACT--GT-TGGTTA-T-G-ATGAGTTTGGTGA-A-AG-TAATAGCA 831
Query 959 TGAAAGATGATGATTTGGAAGCCATTCTAAAGAAAAGAGCTCTGGAGAATCTTAAAAGAT 1018
||||||||||| | ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 832 TGAAAGATGATAACCTGGAAGCCATTCTAAAGAAAAGAGCACTGGAGAATCTAAAAAGAT 891
Query 1019 TTCGTGGAGTGACCCAAAAGAGTGGAATAGCTAAAAAAGAGGTGTCTTCTGTTTCAGAAG 1078
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TTCGTGGAGTGGCCCAAAAGAGTGGAATAGCTAAAAAAGAGGTGTCTTCTGTTTCAGAAG 951
Query 1079 GAGAACCTATGCAAATTGAATCTGAAAAAGTT---GAGTCACAAGACCATGATCTCATGG 1135
|||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 952 GAGAACCTCTGCAAATTGAATCTGAAAAAGTTGAGGAGTCACAAGACCATGGTCTCATGG 1011
Query 1136 AGCAGAAACTTTGTGATTCTGCTGTAAGCAAAGATCTTGAGAATTCAGAAAAGATTTTAC 1195
||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 1012 AGCAGAAGGTTTGTGATTCTGAGGTAAGCAAAGATCTCGAGACTTCAGAAAAGATTTTAC 1071
Query 1196 ATGTTATTAATGTTAAGGAATCTGGAACAGCATTGGCTAATTCTGCCTCTCAACAAGATC 1255
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1072 ATGTTGTTAATGTTAAGGAATCTGGAACAGCATTGGCTAATTCTGCCTCTCAAAAAGATC 1131
Query 1256 AGCAGTCTGGTGATACTGCCAAGGTTAAAGTTAGTTCTGGTCTTAGCTCTTGTACAACCA 1315
|||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||| |
Sbjct 1132 AGCAGTCTGGTGATACTGCCAAGGTTAAAGCTAGTACTGGTATTAGCTCTTGTTCAACGA 1191
Query 1316 AACGAAAGTTGGTTAGACCGGTATTGAGTAAAGATAGTTTAAATCTAGCTAGCAAGAAAG 1375
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 1192 AACGAAAGTTGGTTAGACCGGTATTGGGGAAAGATAGTTTAAATCTAGCTAGCAGGAAAG 1251
Query 1376 AAGCTAGTGGTAGCCAAGATGCTGAAGCAGAGAGCATTGATGGCAGTACCGTTGACAAGA 1435
||| |||||||||||||||||||||||| |||||||| | |||||||||| |||||||||
Sbjct 1252 AAGTTAGTGGTAGCCAAGATGCTGAAGCTGAGAGCATCGGTGGCAGTACCATTGACAAGA 1311
Query 1436 ATTGTTTAGAAAGTACTCTAGCTTTGGTAACAAAGAATGAAGGTGAACACATAGAACCAA 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 ATTGTTTAGAAAGTACTCTAGCTTTGGTAACAAAGAATGAAGGTGAACACATAGAACCAA 1371
Query 1496 CAAAAGTTAGTTCTACGCTCAACGCAGAGTCTTCTTCTCATGCTGACACTGAGGAGGTAG 1555
||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1372 CAAAAATTCGTTCTACTCTCAACGCAGAGTCTTCTTCTCATGCTGACACTGAGGCGGTAG 1431
Query 1556 ATGAAGTCAAAGGAGGGTCTCAGTCTGAACAGAAAACAATTGATGAAACAAAAGATGAGT 1615
||||| |||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1432 ATGAAATCAAAGGAAGGTCTCAGTCTGAACAGAAAA---TGGATGAAACAAAAGATGAGT 1488
Query 1616 CACAGTACGAACAGAAAACGATGACTGTGATGAGGGGTGGAGAAATGGTTCAGGTGAGTT 1675
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 CACAGTACGAACAAAAAACGATGACTGTGATGAGGGGTGGAGAAATGGTTCAGGTGAGTT 1548
Query 1676 ACAAGGTCTACATTCCTAAGAAGGCCTCTTCTTTGGGTAGAAGAAAACTCAACAGGTGAA 1735
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1549 ACAAGGTCTACATTCCTAAGAAGACCTCTTCTTTGGGTAGAAGAAAACTCAACAGGTGAA 1608
Query 1736 GCGACGACATGAAGATAGT 1754
||| |||||||||||||||
Sbjct 1609 GCGGCGACATGAAGATAGT 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70962126435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5