BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53940.1
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495474 jgi|Araly1|495474|fgenesh2_kg.8__1290__AT5G53940.1 845 0.0
> Ahg495474 jgi|Araly1|495474|fgenesh2_kg.8__1290__AT5G53940.1
Length=554
Score = 845 bits (457), Expect = 0.0
Identities = 526/558 (94%), Gaps = 10/558 (2%)
Strand=Plus/Plus
Query 1 AGATAGAACAGTGAAGAAGAAATGGGAAGGATATTCACGGTGGAGCTTGAAGGAAGATCT 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATAGAGCAGTGAAGAAGAAATGGGAAGGATATTCACGGTGGAGCTTGAAGGAAGATCT 60
Query 61 TACAGATGCAGGTTCTGCAGAACCCATCTCGCTCTTCCCGATGATCTTGTCTCTCGGTCG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TACAGATGCAGGTTCTGCAGAACCCATCTTGCTCTTCCCGATGATCTTGTCTCTCGGTCG 120
Query 121 TTTCATTGCCGTAGAGGAAAGGCTTACCTCTTCAACCGTTCGGTGAACATAAGTATGGGT 180
|| |||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 121 TTCCATTGCCGCAGAGGGAAGGCTTACCTTTTCAATCGTGCGGTGAACATAAGTATGGGT 180
Query 181 CCTCTAGAGGAAAGACTGATGCTTTCCGGTATGCACACCGTAGCTGACATTTTCTGCTGC 240
|| |||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 181 CCACTAGAGGAAAGATTGATGCTTTCGGGTATGCACACGGTAGCTGATATTTTCTGCTGC 240
Query 241 TGTTGTGGACAGAATGTTGGCTGGAAATACGAATCAGCGCACGAGAAAGCTCAGAAGTAT 300
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TCTTGTGGACAGAATGTTGGCTGGAAATATGAATCAGCGCACGAGAAAGCTCAGAAGTAT 300
Query 301 AAAGAAGGCAAATTTGTTCTGGAAAGAGGAAGGATCGTGGATGAAATCGATTTATCAACT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGAAGGCAAATTTGTTCTGGAAAGAGGAAGGATCGTGGATGAAATCGATTTATCAACT 360
Query 361 GAGGTTTATATCGATACTCATGGTAGCACAAGCGACACAGAAGATTCTTAAATGTTACCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGGTTTATATCGATACTCATGGTAGCACAAGCGACACAGAAGATTCTTAAATGTTACCT 420
Query 421 TTT-TTCTG---TG-TGTTTGTCAAGAGCAGAGCTTGTTAGTGTAGAAATCTGTAGCATG 475
||| || || | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TTTCTTGTGGAATAATGTTTGTCAAGAGCAGAGCTTGTTAGTGTAGAAATCAGTAGCATG 480
Query 476 TTTATAGAGATGTGTATCAAACTTGTTGTGTTGTTTTTATATCTCGTAGAAATTTTATGT 535
|||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 481 TTTATAGA--TGTGTATGAAACTTGTTGTGTTGTTTTAATATCTCGTAGAAATTA-ATGT 537
Query 536 GAA-TTCGAATCTTTATT 552
||| || ||||| |||||
Sbjct 538 GAACTT-GAATCATTATT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21214507484
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5