BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53950.1
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917064 jgi|Araly1|917064|Al_scaffold_0008_1815 1718 0.0
Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462 224 1e-57
Ahg477665 jgi|Araly1|477665|fgenesh2_kg.3__366__AT3G04060.1 189 4e-47
> Ahg917064 jgi|Araly1|917064|Al_scaffold_0008_1815
Length=1110
Score = 1718 bits (930), Expect = 0.0
Identities = 1066/1129 (94%), Gaps = 20/1129 (2%)
Strand=Plus/Plus
Query 29 ATGGACATTCCGTATTACCACTACGACCATGGCGGAGACAGCCAATATCTTCCACCGGGT 88
||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAACATTCCATATTACCACTATGACCACGGCGGAGACAGCCAATATCTTCCACCGGGT 60
Query 89 TTCAGGTTTCATCCCACGGACGAAGAGCTCATCACTCATTACCTTCTCCGCAAAGTCCTC 148
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 61 TTCAGGTTTCATCCTACGGACGAAGAGCTCATCACTCATTACCTCCTCCGCAAGGTCCTC 120
Query 149 GACGGTTGCTTCTCAAGCCGTGCCATCGCAGAAGTTGATCTCAACAAGTGTGAGCCTTGG 208
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GACGGTTGCTTCTCAAGCCGTGCCATCGCAGAGGTTGATCTCAACAAGTGTGAGCCTTGG 180
Query 209 CAACTTCCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCTTTAGCCTCCGTGAC 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAACTTCCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCTTTAGCCTCCGTGAC 240
Query 269 CGGAAGTATCCGACGGGACTGAGAACTAACAGAGCAACTGAGGCTGGTTACTGGAAAGCT 328
||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CGGAAATATCCAACGGGGCTGAGAACAAACAGAGCAACTGAGGCTGGTTACTGGAAAGCT 300
Query 329 ACCGGAAAAGACAGAGAGATCTTTAGTTCAAAGACTTGTGCACTTGTTGGGATGAAGAAG 388
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 ACCGGAAAAGACAGAGAGATCTTTAGTTCCAAGACTTGTGCACTTGTTGGGATGAAGAAG 360
Query 389 ACTCTTGTCTTTTACAAAGGAAGAGCTCCGAAAGGAGAGAAGAGTAATTGGGTTATGCAT 448
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 ACTCTTGTCTTTTACAAAGGAAGAGCTCCTAAAGGAGAGAAGAGTAATTGGGTTATGCAT 420
Query 449 GAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGGATGAA 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGGATGAA 480
Query 509 TGGGTGATCTCTAGGGTTTTCCAGAAAACCACTTTAGCT-AGCACCGGAGCCGTCTCCGA 567
||||||||||||||||||||||||||||||| ||||| | || |||||||||| ||
Sbjct 481 TGGGTGATCTCTAGGGTTTTCCAGAAAACCAGTTTAG-TCAGTACCGGAGCCG---CC-- 534
Query 568 aggaggaggaggaggaggagCAACTGTGAGCGTAAGCAGCGGTACTGGTCCATCTAAAAA 627
|||||||||| ||| |||||||||||||| |||||| ||||||||||
Sbjct 535 -------------GGAGGAGCAAGTGTTAGCGTAAGCAGCGGCACTGGTGCATCTAAAAA 581
Query 628 GACGAAAGTACCCTCAACAATCTCAAGAAACTATCAAGAACAACCAAGCTCTCCTTCCTC 687
||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 582 GACAAAAGTACCCTCAACAATCTCTAGAAACAATCAAGAACAACCAAGCTCTCCTTCCTC 641
Query 688 CGTCTCACTCCCACCTCTCCTGGATCCGACCACTACCCTCGGCTACACCGACAGCAGTTG 747
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 642 CGTCTCACTCCCACCTCTCCTGGATCCCACCACCACCCTCGGCTACACCGACAGCAGTTG 701
Query 748 CTCCTACGACAGCCGTAGCACCAACACAACCGTCACAGCCAGCGCAATAACCGAGCACGT 807
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 702 CTCCTACGACAGCCGTAGCACCAACACAACCGTCACAGCCAGCGCAATAACTGAGCACGT 761
Query 808 GTCCTGTTTCTCCACTGTCCCTACTACTACTACGGCCTTGGGCTTAGACGTTAACTCATT 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GTCCTGTTTCTCCACTGTCCCTACTACTACTACGGCCTTGGGCTTAGACGTTAACTCATT 821
Query 868 CAGCCGTCTTCCACCGCCGCTAGGGTTTGACTTTGACCCTTTTCCTCGTTTCGTTTCTAG 927
|| | |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 822 CAATCATCTTCCACCGCCGCCAGGGTTTGACTTTGACCCTTTTCCTCGTTTCGTCTCTAG 881
Query 928 AAACGTCTCGACTCAATCTAACTTCAGATCGTTCCAAGAAAACTTCAATCAATTTCCTTA 987
||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 882 AAACGTCTCGAGTCTATCTAACTTCAGATCATTCCAAGAAAACTTCAATCACTTTCCTTA 941
Query 988 CTTTGGATCGTCTTCTGCATCGACTATGACCTCCGCCGTTAATCTGCCTTCTTTCCAAGG 1047
|||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 942 CTTTGGATCGTCTTCTACATCGACAATGACCTCCTCCGTTAATCTGCCTTCTTTCCAAGG 1001
Query 1048 CGGCGGAGGCGTCTCCGGGATGAATTACTGGCTACCGGCGACTGCCGAAGAGAATGAGTC 1107
|||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1002 CGGCGGTGGCGTCTCCGGGATGAATTACTGGCTACCGGCGACTGCGGATGAAAATGAGTC 1061
Query 1108 AAAGGTCGGTGTGCTTCATGCTGGACTTGACTGTATTTGGAACTACTGA 1156
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AAAGGCCGGTGTGCTTCATGCTGGACTTGACTGTATTTGGAACTACTGA 1110
> Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462
Length=1005
Score = 224 bits (121), Expect = 1e-57
Identities = 362/474 (76%), Gaps = 34/474 (7%)
Strand=Plus/Plus
Query 80 CCACCGGGTTTCAGGTTTCATCCCACGGACGAAGAGCTCATCAC-TCATTACCTTCTCCG 138
||||| ||||||||||||||||| || ||||||||| |||| || | |||||| | | |
Sbjct 64 CCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACAT-ATTACC-T-TAAG 120
Query 139 CA-AA-GTCCTCGACGGTTGCTTCTCAAGCCGT-GCCATCGCAGAAGTTGATCTCAACAA 195
| || || | || | | ||| | || || ||||| | ||||| ||||||||||||
Sbjct 121 GAGAAGGTTTTAAACAGCCGATTCAC-GGCGGTGGCCATGGGAGAAGCTGATCTCAACAA 179
Query 196 GTGTGAGCCTTGGCAACTT-CCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCT 254
||||||||||||| | || || ||| || |||||||| |||||||| | |||||||
Sbjct 180 GTGTGAGCCTTGG-GATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTTTACTTCT 238
Query 255 T-TAGCCTCCGTGACCGGAAGTATCCGA-CGGGACTGAGAACTAACAGAGCAACTGAGGC 312
| | | | | ||| |||||||||||| ||||| |||| || ||| | || || ||| |
Sbjct 239 TCT-GTCAAAGGGACAGGAAGTATCCGACCGGGA-TGAGGACGAACCGTGCGACAGAGTC 296
Query 313 TGGTTACTGGAAAGCTACCGGAAAAGA-CAGAGAGATCTT--TAGTTCAAAGACTTGTGC 369
|| || |||||||| ||||| || || || |||||||| || ||||| ||||
Sbjct 297 CGGATATTGGAAAGCGACCGGGAAGGATAAG-GAGATCTTCAAAG-GCAAAG-GTTGT-- 351
Query 370 ACTTGTTGGGATGAAGAAGACTCTTGTCTTTTACAAAGGAAGAGCTCCGAAAGGAGAGAA 429
|| |||||||||||||| || ||||| ||||| | |||||||||||| ||||| || ||
Sbjct 352 -CTCGTTGGGATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAA 410
Query 430 GAGTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAAT-TCTCTTA-C-CATTTCAT 486
|| ||||||||| |||||||||||||||||||||||||||| | || || | || | | |
Sbjct 411 GACTAATTGGGTCATGCATGAATATCGTCTTGAAGGCAAATAT-TCGTATCACAAT-C-T 467
Query 487 CTCAAGAAGCTCCAAGG-ATGAATGGGT-GATCTCTAGGGTTTTCCAGAA-AAC 537
| | | || || ||||| | |||||||| | | | ||||||||| || || |||
Sbjct 468 CCCCA-AATCTGCAAGGGACGAATGGGTCG-TGTGTAGGGTTTTTCACAAGAAC 519
> Ahg477665 jgi|Araly1|477665|fgenesh2_kg.3__366__AT3G04060.1
Length=1488
Score = 189 bits (102), Expect = 4e-47
Identities = 244/310 (79%), Gaps = 19/310 (6%)
Strand=Plus/Plus
Query 227 AAGATGGGAGAGAAAGAATGGTACTTCTTT-AGCCTCCGTGACCGGAAGTATCCGA-CGG 284
|||||||||||||| || | ||||| ||| ||| | || ||||||||||||| |||
Sbjct 433 AAGATGGGAGAGAAGGAGTTTTACTT-TTTCTGCCAGAGGGATCGGAAGTATCCGACCGG 491
Query 285 GACTGAGAACTAACAGAGCAACTGAGGCTGGTTACTGGAAAGCTACCGGAAAAGAC-AGA 343
|| |||| || ||| | || || | | ||||||| ||||| || || || || ||| ||
Sbjct 492 GA-TGAGGACGAACCGTGCGACCGTGTCTGGTTATTGGAAGGCGACTGGGAAGGACAAG- 549
Query 344 GAGATCTTTAG-TTCAAAGACTTGTGCACTTGTTGGGATGAAGAAGACTCTTGTCTTT-T 401
||||||||||| ||||| |||| ||||||||||||||||| || ||||| ||| |
Sbjct 550 GAGATCTTTAGAGGCAAAG-GTTGT---CTTGTTGGGATGAAGAAAACACTTGT-TTTCT 604
Query 402 ACAAAGGAAGAGCTCCGAAAGGAGAGAAGAGTAATTGGGTTATGCATGAATATCGTCTTG 461
| | |||||||||||| ||||| || |||| ||||||||||||||||||||||||||||
Sbjct 605 ATAGAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTGGGTTATGCATGAATATCGTCTTG 664
Query 462 AAGGCAAAT-TCTCTTACCATTTCATCTC-AAGAAGCTCCAAGG-ATGAATGGGTGATCT 518
| ||||||| | ||||| ||| | || | || || | | |||| ||||||||||| | |
Sbjct 665 ATGGCAAATAT-TCTTATCATAACCTCCCCAA-AACCGC-AAGGGATGAATGGGTGGTGT 721
Query 519 CTAGGGTTTT 528
|||||||||
Sbjct 722 GTAGGGTTTT 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43117019127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5