BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53980.1
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495477 jgi|Araly1|495477|fgenesh2_kg.8__1293__AT5G53980.1 1035 0.0
> Ahg495477 jgi|Araly1|495477|fgenesh2_kg.8__1293__AT5G53980.1
Length=671
Score = 1035 bits (560), Expect = 0.0
Identities = 637/674 (95%), Gaps = 6/674 (1%)
Strand=Plus/Plus
Query 33 gaagagaaaaaTGGAGAATTCTCAGAGTCAGGGTAAAAACAAGAAGAAGAGGCTAACACA 92
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 GAAGAGAAAAATGGAGAATTCTCAGAGTCAGAGTAAAAACAAGAAGAAGAGGCTAACACA 60
Query 93 AGATCAAGTTAGACAACTGGAGAAGTGCTTCACTATGAACAAGAAGCTTGAGCCAGATCT 152
||| ||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 61 AGAGCAAGTAAGACAACTGGAGAAGTGCTTCACTGTTAACAAGAAGCTTGAGCCAGATCT 120
Query 153 GAAACTTCAACTGTCGAACCAGCTTGGTCTACCTCAAAGACAAGTCGCTGTCTGGTTCCA 212
||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 121 GAAGCTTCAACTGTCGAACCAGCTTGGTCTACCTCAGAGACAAGTTGCAGTCTGGTTCCA 180
Query 213 AAACAAGCGAGCCAGGTTCAAGACTCAGTCTCTTGAGGTCCAACACTGCACTCTTCAGTC 272
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 AAACAAGCGAGCCAGGTCCAAGACTCAGTCTCTCGAGGTCCAACACTGCACTCTTCAGTC 240
Query 273 CAAGCACGAAGCAGCTCTCTCCGACAAGGCAAAGTTAGAGCATCAAGTGCAGTTTCTCCA 332
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 241 CAAGCTCGAAGCAGCTCTCTCCGACAAAGCAAAGTTAGAGCATCAAGTGCAGTTTCTTCA 300
Query 333 AGATGAGCTGAAGAGAGCAAGGAATCAGCTTGCTCTGTTCACAAATCAAGATTCTCCTGT 392
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGATGAGGTGAAGAGAACGAGGAATCAGCTTGCTCTGTTCACAAATCAAGATTCTCCTGT 360
Query 393 TGATAATTCTAATCTTGGTTCTTGTGATGAAGATCATGATGATCAAGTGGTGGTATTCGA 452
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 AAATAACTCTAATCTTGGTTCTTGTGATGAAGGTCATGATGATCAAGTGGTGGTATTCGA 420
Query 453 CGAGCTTTACGCTTGCTTTGTTAGCAATGGACATGGATCTTCATCAACCTCATGGGTCTG 512
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGAGCTTTACGCTTGTTTTGTTAGCAATGGACATGGATCTTCATCAACCTCATGGGTCTG 480
Query 513 ATTCTGTTTCGACGCAGACAAGATTCCAATATATATAGTCTTGTCTCTGTTTTGTTTCGT 572
|||||||||| || ||||||||||||||||| || | |||| |||||||||||||||||
Sbjct 481 ATTCTGTTTCTACATAGACAAGATTCCAATATTTA-A-TCTTCTCTCTGTTTTGTTTCGT 538
Query 573 TTGATCTG-TTTCTCTTTGTCTGAATAGATTTAAAATTTGTAATTAAAGTCATTCAGACA 631
||||| || |||||||||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 539 TTGAT-TGGTTTCTCTTTGTCTGGATAGATTTACAATCTGTAATTAAAGTCATTCAGACA 597
Query 632 TTC-ACTAATACAAAGAGATGA-TTTTCTTCATTTCTTGTTATGGTTATAAGAATTGCAA 689
||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCCACTAATACAAAGAGAGGAATTTTCTTCATTTCTTGTTATGGTTATAAGAATTGCAA 657
Query 690 TGTTGTAACAACAC 703
||||||||||||||
Sbjct 658 TGTTGTAACAACAC 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25923583560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5