BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54000.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488949 jgi|Araly1|488949|fgenesh2_kg.6__2083__AT5G20400.1 1016 0.0
Ahg917070 jgi|Araly1|917070|Al_scaffold_0008_1821 942 0.0
Ahg474077 jgi|Araly1|474077|fgenesh2_kg.1__4031__AT1G49390.1 913 0.0
Ahg941606 jgi|Araly1|941606|scaffold_602150.1 278 7e-74
> Ahg488949 jgi|Araly1|488949|fgenesh2_kg.6__2083__AT5G20400.1
Length=1098
Score = 1016 bits (550), Expect = 0.0
Identities = 894/1060 (84%), Gaps = 23/1060 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAA-CCAAAGTTGAAGACAGTCCAAGAGGTGGTCGCAGCTGGCGAAAAACTACC 59
||||| ||| |||||||| ||||| |||||||||||||| ||||| |||||| ||| ||
Sbjct 5 ATGGA-AAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGGCGAAGGACTGCC 63
Query 60 GGAAAGATACCTCTACACACCCACCGGCGACGGCGAAGGTGATCAACCT-TTCAATGGTT 118
||| ||||| ||| || |||||||||| ||||||||| || ||||||| || || | |
Sbjct 64 GGAGAGATATCTCCACGCACCCACCGGAGACGGCGAA-GT--TCAACCTCTT-AACGCTG 119
Query 119 TGTTGCCAGAGATGAAAATTTCGATCATCGATCTTAATCTCCTTTTCTCTTCTTCTGACG 178
| |||| |||||| | ||| || ||||||||| | ||| || ||||||||||||| |
Sbjct 120 CGGTGCCGGAGATGGATATTCCGGCCATCGATCTCAGTCTTCTCCTCTCTTCTTCTGAAG 179
Query 179 ACGGTCGAGAAGAGTTGAGTAAACTTCACTCGGCGA-TCTCTACATGGGGCGTTGTTCAG 237
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 180 ACGGTCGAGAAGAGTTGAGTAAACTTCACTCGGC-ACTCTCTACATGGGGCGTTGTTCAG 238
Query 238 GTGATGAATCATGGAATTTCAGAAGCCTTGCTCGACAAGATTCACGAGCTAACGAAGCAG 297
|||||||||||||||||| ||||||| || || ||||| ||| || ||||||| ||| ||
Sbjct 239 GTGATGAATCATGGAATTACAGAAGCGTTTCTTGACAAAATTTACAAGCTAACCAAGGAG 298
Query 298 TTCTTTGTACTTCCGACCAAAGAGAAACAGAAGTACGCAAGAGAGATAAGTAGTTTTCAA 357
||||||| ||||||||| ||||||||||||||| ||| |||||||| ||||| | |||
Sbjct 299 TTCTTTGCGCTTCCGACCGAAGAGAAACAGAAGTGCGCGAGAGAGATTGGTAGTATCCAA 358
Query 358 GGATTTGGAAACGACATGATTCTGTCTGATGATCAAGTTCTCGATTGGGTCGACCGCTTG 417
|||| |||||||||||||||||| | |||||||||||||| |||||| ||||||| |||
Sbjct 359 GGATATGGAAACGACATGATTCTTTGGGATGATCAAGTTCTTGATTGGATCGACCGTTTG 418
Query 418 TACCTCATTACGTACCCTGAAGATCA-ACGACAGCTTAAATTCTGGCCTGAAAATCCAAG 476
|| | | ||| |||||||||||||| | |||| ||||| ||||||||| || ||| |
Sbjct 419 TATATTACTACATACCCTGAAGATCAGA-GACAACTTAAGTTCTGGCCTCAAG-TCCCAC 476
Query 477 -CGGATTTAGGGAAACTTTACATGAATACACAATGAAGCAACAGTTAGTGGTTGAGAAAT 535
|||||| |||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct 477 TCGGATTCAGGGAAACTTTACATGAATACACAATGAAGCAACGGATAGTGATTGAGAAAT 536
Query 536 TCTTCAAGGC-ATTAGCTAGATCGTTGGAGTTGGAAGATAATTGCTTTCTAGAGATGCAT 594
|||| || || || |||||||| ||||| |||||||| ||| | |||||||| ||| ||
Sbjct 537 TCTTTAAAGCCATG-GCTAGATCTTTGGAATTGGAAGAGAATAGTTTTCTAGACATGTAT 595
Query 595 GGTGAAAATGCTACGT-TGGAGACAAGATTCAACATCTACCCTCCATGTCCGAGGCCGGA 653
|| |||| |||||| | |||| |||||| ||||||| || ||||||||||||| ||||||
Sbjct 596 GGGGAAAGTGCTAC-TATGGATACAAGACTCAACATGTATCCTCCATGTCCGAAGCCGGA 654
Query 654 CAAGGTTCTTGGGCTAAAACCGCATTCTGATGGCTCAGCCTTT-ACTCTTATCCTACCCG 712
||||||| ||||| | |||||||| |||||||||| || ||| |||||| || ||||||
Sbjct 655 CAAGGTTATTGGGGTTAAACCGCACGCTGATGGCTCGGC-TTTCACTCTTCTCTTACCCG 713
Query 713 ACAAAAATGTAGAAGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTTCAATTC 772
||||| |||| ||||| ||||||||||||||||||||||| |||||||||||| | ||
Sbjct 714 ACAAAGATGTGGAAGGGCTTCAGTTCCTCAAAGATGGGAAATGGTATAAAGCTCCTATAG 773
Query 773 TCCCTCATACAATTCTGATCAATGTAGGAGATACTA-TGGAGGTAATGAGCAATGGAATA 831
||||| |||||||| |||||||||| || ||| | | ||||| ||||||||||||| |||
Sbjct 774 TCCCTGATACAATTTTGATCAATGTTGGTGAT-CAAATGGAGATAATGAGCAATGGGATA 832
Query 832 TACAAGAGTCCGGTTCATAGAGTGGTG-CTTAACGGAAAAAAGGAAAGGATATATGTGGC 890
|||||||| |||||||||||||||||| || ||| || ||||||||||||||| ||||||
Sbjct 833 TACAAGAGCCCGGTTCATAGAGTGGTGACT-AACAGAGAAAAGGAAAGGATATCTGTGGC 891
Query 891 AACATTTTGTAATGCTGATGAAGACAAAGAGATTCAACCTTTAAATGGGCTTGTGTCTGA 950
||| ||||| | | | | || ||||||||||||||| ||| | ||| ||||||||||||
Sbjct 892 AACGTTTTGCATTCCAGGTGCAGACAAAGAGATTCAGCCTGTGGATGAGCTTGTGTCTGA 951
Query 951 GGCTAGACCAAGGTTGTACAAAGCAGTTAAGAAGTCTGAGAAAAACTTCTTCGATTACTA 1010
||| |||||||| ||||| ||| |||||||||||| || | | || |||| | |||||
Sbjct 952 GGCAAGACCAAGATTGTATAAAACAGTTAAGAAGTATGTGGAGCTCTACTTCAAGTACTA 1011
Query 1011 TCAACAAGGTCGAAGACCGATCGAAGCTGCAATGATCTGA 1050
|||||| |||||| |||| || ||||||||| ||||||||
Sbjct 1012 TCAACAGGGTCGACGACCTATTGAAGCTGCATTGATCTGA 1051
> Ahg917070 jgi|Araly1|917070|Al_scaffold_0008_1821
Length=993
Score = 942 bits (510), Expect = 0.0
Identities = 613/662 (93%), Gaps = 10/662 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAA-CCAAAGTTGAAGACAGTCCAAGAGGTGGTCGCAGCTGGCGAAAAACTACC 59
||||| ||| |||||||| ||||| ||||||||| || | ||||| || |||||||||||
Sbjct 1 ATGGA-AAAGCCAAAGTTCAAGACTGTCCAAGAGCTGCTTGCAGCCGGAGAAAAACTACC 59
Query 60 GGAAAGATACCTCTACACACCC-ACCGGCGACGGCGAAGGTGATCAACCTTTCAATGGTT 118
|||||||||||||| ||| ||| || |||||||| |||||||||||||||||||| |||
Sbjct 60 GGAAAGATACCTCTGCAC-CCCAACAGGCGACGGAGAAGGTGATCAACCTTTCAA-CGTT 117
Query 119 T-GTTGCCAGAGATGAAAATT-TCGATCATCGATCTTAATCTCCTTTTCTCTTCTTCTGA 176
| | |||| || ||| ||||| | | |||||||||||| ||| || |||||||||||||
Sbjct 118 TCGATGCCGGAAATGGAAATTAT-GGTCATCGATCTTAGTCTTCTCCTCTCTTCTTCTGA 176
Query 177 CGACGGTCGAGAAGAGTTGAGTAAACTTCACTCGGCGATCTCTACATGGGGCGTTGTTCA 236
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 177 TGACGGTCGAGAAGAGTTGAGTAAACTTCACTCAGCGATCTCTACATGGGGCGTTGTTCA 236
Query 237 GGTGATGAATCATGGAATTTCAGAAGCCTTGCTCGACAAGATTCACGAGCTAACGAAGCA 296
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 237 GGTGATGAATCATGGAATTTCAGAAGCCTTTCTCGACAAGATTCTCGAGCTAACGAGGCA 296
Query 297 GTTCTTTGTACTTCCGACCAAAGAGAAACAGAAGTACGCAAGAGAGATAAGTAGTTTTCA 356
||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 297 GTTCTTTGTGCTTCCGACCGAAGAGAAACATAAGTACGCAAGAGAGATTAGTAGTTTTCA 356
Query 357 AGGATTTGGAAACGACATGATTCTGTCTGATGATCAAGTTCTCGATTGGGTCGACCGCTT 416
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 357 AGGATTTGGAAACGACATGATTCTGTCTGATGATCAAGTTCTTGACTGGGTCGACCGCTT 416
Query 417 GTACCTCATTACGTACCCTGAAGATCAACGACAGCTTAAATTCTGGCCTGAAAAT-CCAA 475
|||||||||||| || ||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 417 GTACCTCATTACTTATCCTGAAGATCAACGACAGCTTAAGTTCTGGCCT-AAAATCCCAA 475
Query 476 GCGGATTTAGGGAAACTTTACATGAATACACAATGAAGCAACAGTTAGTGGTTGAGAAAT 535
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 476 GCGGATTCAGGGAAACTTTACATGAATACACAATGAAGCAACAGCTAGTGGTTGAGAAAT 535
Query 536 TCTTCAAGGCATTAGCTAGATCGTTGGAGTTGGAAGATAATTGCTTTCTAGAGATGCATG 595
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 TCTTCAAGGCATTAGCTAGATCGTTGGGGTTGGAAGATAATTGCTTTCTAGAGATGCATG 595
Query 596 GTGAAAATGCTACGTTGGAGACAAGATTCAACATCTACCCTCCATGTCCGAGGCCGGACA 655
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 596 GTGAAAATGCTACGTTGGAGACAAGATTCAACATGTATCCTCCATGTCCGAGGCCGGACA 655
Query 656 AG 657
||
Sbjct 656 AG 657
Score = 510 bits (276), Expect = 7e-144
Identities = 318/338 (94%), Gaps = 4/338 (1%)
Strand=Plus/Plus
Query 715 AAAAATGTAGAAGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTTCAATTCTC 774
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 AAAAATGTGGATGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTTCAATCCTC 717
Query 775 CCTCATACAATTCTGATCAATGTAGGAGATACTATGGAGGTAATGAGCAATGGAATATAC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CCTCATACAATTCTGATCAATGTAGGAGATACTATGGAGGTAATGAGCAATGGAATATAC 777
Query 835 AAGAGTCCGGTTCATAGAGTGGTGCTTAACGGAA--AAAAGGAAAGGATATATGTGGCAA 892
||||| |||||||||||||||||||||||| || |||||| |||||||| ||||| ||
Sbjct 778 AAGAGCCCGGTTCATAGAGTGGTGCTTAAC--AACGAAAAGGCAAGGATATCTGTGGTAA 835
Query 893 CATTTTGTAATGCTGATGAAGACAAAGAGATTCAACCTTTAAATGGGCTTGTGTCTGAGG 952
| |||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 836 CGTTTTGTGATGCTGATGAAGACAAAGAGATTCAACCTGTAACTGAGCTTGTGTCTGAGG 895
Query 953 CTAGACCAAGGTTGTACAAAGCAGTTAAGAAGTCTGAGAAAAACTTCTTCGATTACTATC 1012
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 896 CTAGACCAAGATTGTACAAAGCAGTTAAGAAGTCTGAGAAGAACTTCTTCGATTACTATC 955
Query 1013 AACAAGGTCGAAGACCGATCGAAGCTGCAATGATCTGA 1050
||||||||||||||||||||||||||||| | ||||||
Sbjct 956 AACAAGGTCGAAGACCGATCGAAGCTGCATTTATCTGA 993
> Ahg474077 jgi|Araly1|474077|fgenesh2_kg.1__4031__AT1G49390.1
Length=1048
Score = 913 bits (494), Expect = 0.0
Identities = 877/1061 (83%), Gaps = 29/1061 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAACCAAAGTTGAAGACAGTCCAAGAGGTGGTCGCAGCTGGCGAAAAACTACCG 60
|||||||| |||||||| ||||| |||||||||||||| ||||| |||||| |||||||
Sbjct 1 ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGGCGAAGGACTACCG 60
Query 61 GAAAGATACCTCTACA-CA-CCCACCGGCGACGGCGAAGGTGATCAACCT-TTCAATGGT 117
|| ||||| ||| || | || ||| |||| |||||| | ||||||| || || |||
Sbjct 61 GAGAGATA--TCTCCATGAGCCAACCAGCGAAGGCGAA--AG-TCAACCTCTT-AACGGT 114
Query 118 TTGTTGCCAGAGATGAAAATTTCGA-TCATCGATCTTAATCTCCTTTTCTCTTCTTCTGA 176
| | |||| |||||| | | ||| | ||||||||| | ||| || ||||||||||||||
Sbjct 115 TCGGTGCCGGAGATGGATA-TTCCAGCCATCGATCTCAGTCTTCTCTTCTCTTCTTCTGA 173
Query 177 CGACGGTCGAGAAGAGTTG-AGTAAACTTCACTCGGCGA-TCTCTACATGGGGCGTTGTT 234
|| ||||||||||||||| || ||||||||||| || | | ||||||||||||||||||
Sbjct 174 AGAGGGTCGAGAAGAGTTGAAG-AAACTTCACTCAGC-ACTATCTACATGGGGCGTTGTT 231
Query 235 CAGGTGATGAATCATGGAATTTCAGAAGCCTTGCTCGACAAGATTCACGAGCTAACGAAG 294
||||||||||||||||||||| | |||| || || ||||||||| || ||||||| |||
Sbjct 232 CAGGTGATGAATCATGGAATTACTGAAGAGTTTCTTGACAAGATTTACAAGCTAACCAAG 291
Query 295 CAGTTCTTTGTACTTCCGACCAAAGAGAAACAGAAGTACGCAAGAGAGATAAGTAGTTTT 354
|||||||||| ||||| ||| |||||||||| |||| ||| ||||||| | ||| | |
Sbjct 292 CAGTTCTTTGCGCTTCCAACCGAAGAGAAACACAAGTGCGCGAGAGAGACAGGTAATATC 351
Query 355 CAAGGATTTGGAAACGACATGATTCTGTCTGATGATCAAGTTCTCGATTGGGTCGACCGC 414
||||||| ||||||||| ||||||||||| ||| |||||||||| |||||| |||||||
Sbjct 352 CAAGGATATGGAAACGATATGATTCTGTCCGATAATCAAGTTCTTGATTGGATCGACCGT 411
Query 415 TTGTACCTCATTACGTACCCTGAAGATCAA-CGACAGCTTAAATTCTGGCCTGAAAATCC 473
|||| |||| ||| |||||||||||| || || || ||| | ||||||||| || |||
Sbjct 412 TTGTTTCTCACTACTTACCCTGAAGAT-AAGCGTCAACTTCAGTTCTGGCCT-CAAGTCC 469
Query 474 AAG-CGGATTTAGGGAAACTTTACATGAATACACAATGAAGCAACAGTTAGTGGTTGAGA 532
| ||| || || |||||||||||||||||||| |||||||||| | ||||| ||||||
Sbjct 470 CGGTCGGGTTCAGTGAAACTTTACATGAATACACGATGAAGCAACGGGTAGTGATTGAGA 529
Query 533 AATTCTTCAAGGCAT-TAGCTAGATCGTTGGAGTTGGAAGATAATTGCTTTCTAGAGATG 591
||||||| ||||| | | |||||||| ||||| |||||||| ||||| ||||||||||||
Sbjct 530 AATTCTTTAAGGC-TATGGCTAGATCATTGGAATTGGAAGAGAATTGTTTTCTAGAGATG 588
Query 592 CATGGTGAAAATGCTACGTTGGAGACAAGATTCAACATCTACCCTCCATGTCCGAGGCCG 651
|||| |||||||||| || | ||||||||||| ||| ||||||||||| |||||
Sbjct 589 TATGGAGAAAATGCTATAATGAATTCAAGATTCAACTTCTTTCCTCCATGTCCAAGGCCA 648
Query 652 GACAAGGTTCTTGGGCTAAAACCGCATTCTGATGGCTCAGCCT-TTACTCTTATCCTACC 710
||||||||| ||||| | |||||||| |||||||||| | || | |||||| || ||||
Sbjct 649 GACAAGGTTATTGGGATTAAACCGCACGCTGATGGCTC-GGCTATCACTCTTCTCTTACC 707
Query 711 CGACAAAAATGTAGAAGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTTCAAT 770
||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 708 CGACAAAGATGTCGAAGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTCCAAT 767
Query 771 TCTCCCTCATACAATTCTGATCAATGTAGGAGAT-ACTATGGAGGTAATGAGCAATGGAA 829
||||| |||||||||| |||||| |||||||| | |||||| ||||||| ||||| |
Sbjct 768 AGTCCCTGATACAATTCTTATCAATCTAGGAGATCAG-ATGGAGATAATGAGTAATGGGA 826
Query 830 TATACAAGAGTCCGGTTCATAGAGTGGTG-CTTAACGGAAAAAAGGAAAGGATATATGTG 888
||||||||||||||||||||||||||||| | ||| || ||||||||||||| | ||||
Sbjct 827 TATACAAGAGTCCGGTTCATAGAGTGGTGACG-AACAGAGAAAAGGAAAGGATCTCTGTG 885
Query 889 GCAACATTTTGTAATGCTGATGA-AGACAAAGAGATTCAACCTTTAAATGGGCTTGTGTC 947
||||| |||||| | | | | ||||||||||||||| ||| ||||||||||||||
Sbjct 886 GCAACGTTTTGTGTTCCGGG-GCCAGACAAAGAGATTCAGCCTGCGAATGGGCTTGTGTC 944
Query 948 TGAGGCTAGACCAAGGTTGTACAAAGCAGTTAAGAAGTCTGAGAAAAACTTCTTCGATTA 1007
|||||| |||||||| ||||| ||| || ||| |||| || | | | || | | ||
Sbjct 945 TGAGGCAAGACCAAGATTGTATAAAACAATTACCAAGTATGCGGAGCTCCACTACAAGTA 1004
Query 1008 CTATCAACAAGGTCGAAGACCGATCGAAGCTGCAATGATCT 1048
||||||||||||||||||| | || ||||||||| ||||||
Sbjct 1005 CTATCAACAAGGTCGAAGAACTATTGAAGCTGCATTGATCT 1045
> Ahg941606 jgi|Araly1|941606|scaffold_602150.1
Length=493
Score = 278 bits (150), Expect = 7e-74
Identities = 239/281 (85%), Gaps = 9/281 (3%)
Strand=Plus/Plus
Query 530 AGAAATTCTTCAAGGCATTAGCTAGATCGTTGGAGTTGGAAGATAATTGCTTTCTAGAGA 589
||||| |||| || ||| | |||||||| ||||| |||||||| ||||| |||||||| |
Sbjct 4 AGAAAGTCTTAAAAGCAATGGCTAGATCTTTGGAATTGGAAGAGAATTGTTTTCTAGACA 63
Query 590 TGCATGGTGAAAATGCTACGTTGGAGACAAGATTCAACATCTACCCTCCATGTCCGAGGC 649
|| |||| |||||||||| | |||| |||||||||||||| || ||||||||||||| ||
Sbjct 64 TGTATGGAGAAAATGCTATGATGGATACAAGATTCAACATGTATCCTCCATGTCCGAAGC 123
Query 650 CGGACAAGGTTCTTGG-GCTAAAACCGCATTCTGAT-GGCTCAGCCTTT-ACTCTTATCC 706
||||||||||| | || | | ||||||||| ||||| | || | |||| |||||| ||
Sbjct 124 CGGACAAGGTTATCGGTG-TTAAACCGCATGCTGATAAG-TC-GGCTTTCACTCTTCTCT 180
Query 707 TACCCGACAAAAATGTAGAAGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTT 766
| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCCCGACAAAAATGTCGAAGGGCTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTC 240
Query 767 CAATTCTCCCT-CA--TACAATTCTGATCAATGTAGGAGAT 804
||||| || || || |||||||||||||||||| ||||||
Sbjct 241 CAATTGTCTCTGCAGATACAATTCTGATCAATGTTGGAGAT 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5