BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54010.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950024 jgi|Araly1|950024|scaffold_801911.1 1797 0.0
Ahg950022 jgi|Araly1|950022|scaffold_801909.1 577 9e-164
Ahg352016 jgi|Araly1|352016|fgenesh1_pg.C_scaffold_6002609 246 3e-64
> Ahg950024 jgi|Araly1|950024|scaffold_801911.1
Length=1381
Score = 1797 bits (973), Expect = 0.0
Identities = 1233/1358 (91%), Gaps = 19/1358 (1%)
Strand=Plus/Plus
Query 1 AGAACATATATGGGGTCAAAGTTTCATGCTTTTATGTTCCCATGGTTTGGTTTTGGTCAC 60
|||||| | |||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 12 AGAACAGAAATGGGGTCAAAGTTTCATGCTTTTATGTTCCCTTGGTTCGCTTTTGGTCAC 71
Query 61 ATGACTGCATTTTTGCATCTGGCTAACAAACTAGCGGAGAAAGACCACAAAATAACTTTC 120
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 72 ATGACTGCATTTTTGCATCTGGCTAACAAACTAGCTGAGAAAGGTCACAAAATAACTTTC 131
Query 121 TTGCTCCCCAAGAAAGC-TCGAAAGCAACTTGAATCTCTCAATCTCTTCCCAGACTGCAT 179
||||||||||||||||| | | |||||||||||| ||||||||||||||||| |||||||
Sbjct 132 TTGCTCCCCAAGAAAGCATTG-AAGCAACTTGAACCTCTCAATCTCTTCCCACACTGCAT 190
Query 180 TGTCTTTCAGACTCTTACCATCCCATCTGTAGATGGCCTCCCTGATGGTGCTGAGACAAC 239
|||||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||||
Sbjct 191 CGTCTTTCACACTCTTACCATCCCTTCTGTCGATGGCCTCCCTGCTGGCGCGGAGACAAC 250
Query 240 CTCGGATATCCCGATCTCGTTAGGCAGTTTTCTCGCCTCGGCTATGGATCGGACACGCAT 299
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 251 CTCGGATATCCCGATCTCCTTAGGGAGTTTTCTCGCCTCGGCTATGGATCGGACACGAAA 310
Query 300 TCAGGTCAAAGAAGCAGTTTCTGTTGGTAAACCGGATCTGATTTTCTTCGATTTTGCTCA 359
||| ||| ||||||| ||||| | || |||||||| |||||||||| |||||||||||
Sbjct 311 TCAAGTCGAAGAAGCGGTTTCAATACGTCAACCGGATATGATTTTCTTTGATTTTGCTCA 370
Query 360 CTGGATTCCGGAAATAGCTAGAGAGTATGGAGTCAAGAGTGTCAATTTCATAACGATTTC 419
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 371 CTGGATTCCGGAAATAGCTAGAGAGTATGGAGCCAAGAGTGTGAATTTCATAACGATTTC 430
Query 420 TGCAGCATGTGTAGCTATTTCGTTCGTCCCTGGTCGTAGTCAAGATGACTTGGGTAGTAC 479
|||||||||||||||||| || |||||||||||| ||||||||||||||||||||| | |
Sbjct 431 TGCAGCATGTGTAGCTATCTCATTCGTCCCTGGTTGTAGTCAAGATGACTTGGGTATTCC 490
Query 480 TCCACCGGGATACCCTTCCTCCAAGGTGTTGCTTCGGGGACACGAAACCAACAGTTTGTC 539
|||||||||||| ||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 491 TCCACCGGGATATCCTTCGTCGAAGGTGTTGCTTCGTGGACAAGAAACCAACAGTTTGTC 550
Query 540 GTTCCTCTCCTATCCGTTTGGAGATGGAACTA-GTTTTTACGAACGGATCATGATAGGAC 598
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 551 GTTCCTCTCCTATCCGTTTGGAGATGGAACTACG-TTTTACGAACGGATCATGATAGGAC 609
Query 599 TTAAGAACTGCGATGTCATTTCGATAAGGACATGCCAAGAAATGGAAGGAAAGTTCTGCG 658
|||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 610 TTAAAAACTGTGATGTCATTTCGATAAGGACATGCCAAGAAATAGAAGGAAAATTCTGCG 669
Query 659 ATTTCATCGAAA-ACCAATTTCAAAGAAAAGTTCTCTTGACAGGTCCAATGCTTCCTGAG 717
||| |||||||| | |||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 670 ATTACATCGAAAGA-CAATTTCAAAGAGAAGTTCTTTTGACGGGTCCAATGCTTCCTGAT 728
Query 718 CCGGACAATAGCAAACCGCTAGAAGATCAATGGCGTCAGTGGCTTAGCAAGTTCGATCCG 777
|| ||| || ||||||||||||||||||||||||| ||||| ||| ||||||| ||
Sbjct 729 CCAGAC---AGTAAACCGCTAGAAGATCAATGGCGTCTCTGGCTGAGCCAGTTCGAACCA 785
Query 778 GGATCAGTAATATATTGTGCATTGGGCAGCCAAATCATTCTTGAAAAGGATCAATTCCAA 837
| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 786 GAATCAGTAATATATTGTGCATTGGGAAGCCAAATCATTCTGGAAAAGGATCAATTCCAA 845
Query 838 GAACTCTGTTTAGGAATGGAGCTGACAGGTTTACCATTTCTTGTAGCGGTAAAGCCACCA 897
||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct 846 GAACTCTGTTTAGGAATGGAGCTCACTGGTTTACCATTTCTCGTAGCGGTAAAACCACCA 905
Query 898 AAAGGTTCATCGACAATCCAAGAAGCCTTACCAAAAGGGTTTGAAGAGAGGGTTAAAGCA 957
||||| || ||| ||||||||||||||||| |||||||| |||||| ||||||| |
Sbjct 906 AAAGGCGCAAAGACGATCCAAGAAGCCTTACCGAAAGGGTTCGAAGAGCGGGTTAAGGGG 965
Query 958 CGTGGAGTGGTTTGGGGAGGATGGGTGCAGCAACCATTGATATTAGCTCATCCATCAATA 1017
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 966 CGTGGAGTGGTTTGGGGAGGATGGGTGAAGCAACCATTGATATTGGCTCATCCATCAATA 1025
Query 1018 GGCTGCTTTGTGAGCCATTGTGGTTTCGGGTCAATGTGGGAGGCTCTAGTGAATGACTGC 1077
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1026 GGCTGCTTTGTGAGCCATTGCGGTTTCGGGTCAATGTGGGAGGCTATAGTGAATGACTGC 1085
Query 1078 CAAATAGTGTTTATTCCACATTTGGGTGAGCAAATATTGAACACAAGACTGATGAGCGAG 1137
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1086 CAAATAGTGTTTATTCCACATTTGGGTGAGCAAATATTAAACACCAGACTGATGAGCGAG 1145
Query 1138 GAACTCAAGGTCTCGGTAGAGGTGAAAAGAGAGGAAA-CGGGATGGTTTTCGAAGGAGAG 1196
|||||| |||||||||||||||||||||||||| ||| | ||||||||||| ||||||||
Sbjct 1146 GAACTCGAGGTCTCGGTAGAGGTGAAAAGAGAG-AAAGCTGGATGGTTTTCAAAGGAGAG 1204
Query 1197 CTTGAGCGGTGCGGTCAGGTCTGTGATGGACAGAGATAGCGAGCTCGGGAAT-TGGGCGA 1255
||||||||| ||||| |||||||||||||||| |||||||||||| ||||| | | ||
Sbjct 1205 CTTGAGCGGCGCGGTTAGGTCTGTGATGGACAAAGATAGCGAGCTAGGGAACCTAGT-GA 1263
Query 1256 GGAGGAACCACG-TAAAGTGGAAGGAGTCTCT-GCTTCGT-CATGGACTAATGAGTGGTT 1312
|||||||||| | |||| ||||| |||||||| | || || | ||||||||||| |||||
Sbjct 1264 GGAGGAACCATGCTAAA-TGGAAAGAGTCTCTAG-TTAGTAC-TGGACTAATGAATGGTT 1320
Query 1313 ATCTTAATAAGTTCGTAGAAGCATTGGAGAAACTAGTC 1350
|| | |||||||| |||||| ||| |||||||||||
Sbjct 1321 ATGTCAATAAGTTTATAGAAGAATTACAGAAACTAGTC 1358
> Ahg950022 jgi|Araly1|950022|scaffold_801909.1
Length=1384
Score = 577 bits (312), Expect = 9e-164
Identities = 638/794 (80%), Gaps = 28/794 (4%)
Strand=Plus/Plus
Query 594 AGGACTTAAGAACTGCGATGTCATTTCGATAAGGACATGCCAAGAAATGGAAGG-AAAGT 652
||| || ||||| || ||| | || || || ||||| || ||||| | ||||| ||| |
Sbjct 587 AGGTCTAAAGAATTGTGATTTTATCTCAATTAGGACTTGTAAAGAAGTTGAAGGTAAA-T 645
Query 653 TCTGCGA-TTTCATCGAAAACCAATTTCAAAGAAAAGTTCTCTTGACAGGTCCAATGCTT 711
||||||| | | ||||| || |||| || || || ||||| ||||||||||||||||||
Sbjct 646 TCTGCGACTAT-ATCGAGAAGCAATACCAGAGGAAGGTTCTTTTGACAGGTCCAATGCTT 704
Query 712 CCTGAGCCGGACAATAGCAAACCGCTAGAAGATCAATGGCG-TCAGTGGCT-TAGCAAGT 769
|| ||||| ||||| || | ||| || ||||||| |||| | ||| ||||| | | | |
Sbjct 705 CCAGAGCCAGACAACAGTAGACCACTTGAAGATCGATGG-GATCATTGGCTAAATC-ATT 762
Query 770 TCGATCCGGGATCAGTAATATATTGTGCATTGGGCAGCCAAATCA-TTCTTGAAAAGGAT 828
|||| || || || |||||||||||||||||||| || ||||||| || | || ||||||
Sbjct 763 TCGAACCCGGTTCGGTAATATATTGTGCATTGGGAAGTCAAATCACTT-TAGAGAAGGAT 821
Query 829 CAATTCCAAGAACTCTGTTTAGGAATGGAGCTGACAGGTTTACCATTTCTTGTAGCGGTA 888
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 822 CAATTCCAAGAACTCTGTTTAGGAATGGAGCTCACTGGTTTACCGTTTCTTGTAGCGGTA 881
Query 889 AAGCCACCAAAAGGTTCATCGACAATCCAAGAAGCCTTACCAAAAGGGTTTGAAGAGAGG 948
|||||||||||||| || ||| ||||||||||| || ||| ||||||||| ||||||
Sbjct 882 AAGCCACCAAAAGGCGCAAAGACGATCCAAGAAGCGTTGCCAGAAGGGTTTGCGGAGAGG 941
Query 949 GTTAAAGCA-CGTGGAGTGGTTTGGGGAGGATGGGTGCAGCAACCATTGATATTAGCTCA 1007
|| || | | | ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 942 GTGAA-GAATCATGGAGTGGTTTGGGGAGAATGGGTGCAGCAACCATTGATATTGGCTCA 1000
Query 1008 TCCATCAATAGGCTGCTTTGTGAGCCATTGTGG-TTTCGGGTCAATGTGGGAGGCTCTAG 1066
||||||| |||| |||||||||| |||||||| ||| || |||||||||||| ||||||
Sbjct 1001 TCCATCAGTAGGATGCTTTGTGAATCATTGTGGGTTT-GGATCAATGTGGGAGTCTCTAG 1059
Query 1067 TGAATGACTGCCAAATAGTGTTTATTCCACATTTGGGTGAGCAAATAT-TGAACACAAGA 1125
||| ||| ||||||||||| || ||||| ||||| |||| ||| | | | ||||| |||
Sbjct 1060 TGAGTGATTGCCAAATAGTATTGCTTCCATATTTGTGTGATCAAGT-TCTCAACACTAGA 1118
Query 1126 CTGATGAGCGAGGAACTCAAGGTCTCGGTAGAGGTGAAAAGAGAGGAAACGGGATGGTTT 1185
||||||| |||||||| |||| || || || ||| ||||||| ||||| ||||||||
Sbjct 1119 TTGATGAGTGAGGAACTTGAGGTTTCTGTGGAAGTGGAAAGAGAAGAAACAGGATGGTTC 1178
Query 1186 TCGAAGGAGAGCTTGA-GCGGTGCGGTCAGGTCTG-TGATGGACAGAGATAGCGAGCTCG 1243
||||| |||||||| | | | |||| ||| | || | ||||||| |||||| ||| | |
Sbjct 1179 TCGAAAGAGAGCTT-ATGTGTTGCGATCACCT-TGGTAATGGACAAAGATAGTGAGTTAG 1236
Query 1244 GGAAT-TGGGCGAGGAGGAACCACG-TAAAGTGGAAGGAGTCTCTGCTTCGTCATGGACT 1301
||||| ||| ||||| |||||||| |||| || ||| || || || || |||||||| |
Sbjct 1237 GGAATCTGGT-GAGGACGAACCACGCTAAATTGAAAG-AGGCTTTGGTTAGTCATGGATT 1294
Query 1302 AATGAGTGGTTAT-CTTAATAAGTTCGTAGAAGCATTGGAGAAACTAGTCCAAA-ATATA 1359
| | | | ||| | | ||| || || ||| | ||| || | |||||| || ||| |
Sbjct 1295 ATTAACCGATTACACCGA-TAAATTTGTTGAAACTTTGCAGGATCTAGTC-AACGATACA 1352
Query 1360 AATCTTGAATGAAA 1373
||||||||||||||
Sbjct 1353 AATCTTGAATGAAA 1366
> Ahg352016 jgi|Araly1|352016|fgenesh1_pg.C_scaffold_6002609
Length=504
Score = 246 bits (133), Expect = 3e-64
Identities = 304/386 (79%), Gaps = 13/386 (3%)
Strand=Plus/Plus
Query 928 CCAA-AAGGGTTTGAAGAGAGGGTTAAA-GCACGTGGAGTGGTTTGGGGAGGATGGGTGC 985
|||| ||||||| || ||| |||| ||| || ||||| ||||| |||||||||||||| |
Sbjct 75 CCAAGAAGGGTTCGAGGAGCGGGTGAAAGGC-CGTGGTGTGGTATGGGGAGGATGGGTAC 133
Query 986 AGCAACCATTGATATTAGCTCATCCATCAATAGGCTGCTTTGTGAGCCATTGTGGTTTCG 1045
| ||||| |||||||| |||||||||||||||||||||||||||| |||||||||| ||
Sbjct 134 ATCAACCTTTGATATTGGCTCATCCATCAATAGGCTGCTTTGTGAACCATTGTGGTCCCG 193
Query 1046 GGTCAATGTGGGAGGCTCTAGTGAATGACTGCCAAATAGTGTTT-ATTCCACATTTGGGT 1104
| ||| ||||||||| | |||| ||| |||||||| || ||| |||||| ||| ||
Sbjct 194 GAAAAATATGGGAGGCTTTGGTGAGTGATTGCCAAATGGT-TTTGATTCCATTTTTAAGT 252
Query 1105 GAGCAAATATTGAACACAAGACTGATGAGCGAGGAACTCA-AGGTCTCGGTAGAGGTGAA 1163
|| ||| || | ||||| | |||||| ||||||| || ||||||| ||||| ||| |
Sbjct 253 GATCAACTACTCTCCACAAAATTGATGACCGAGGAA-TCCGAGGTCTCTGTAGAAGTGTA 311
Query 1164 AAGAGAGGAAACGGGATGGTTTTCGAAGGAGAGCTTGAGCGGTGCGGTCAGGTCTGTGAT 1223
|| || |||| ||||||||||| |||||||||||||| |||| ||| |||||||||
Sbjct 312 TAGGGAAAAAACAGGATGGTTTTCAAAGGAGAGCTTGAGATATGCGATCAAGTCTGTGAT 371
Query 1224 GGACAGAGATAGCGAGC-TCGGGAAT-TGGGCGAGGAGGAACCACGTAAAGTGGAAGGAG 1281
| | | ||| || | || ||||||| | | |||||| |||||| |||| |||||||
Sbjct 372 GTATAAAGAGAGTG-GCCTCGGGAAGCTAGT-GAGGAGTAACCACACCAAGTTGAAGGAG 429
Query 1282 -TCTCTGCTTCGTCATGGACTAATGA 1306
| | || || ||| |||| || |||
Sbjct 430 ATTT-TGGTTAGTCCTGGATTATTGA 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5