BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54030.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950025 jgi|Araly1|950025|scaffold_801912.1 126 3e-28
> Ahg950025 jgi|Araly1|950025|scaffold_801912.1
Length=272
Score = 126 bits (68), Expect = 3e-28
Identities = 198/257 (77%), Gaps = 23/257 (9%)
Strand=Plus/Plus
Query 1 ATGTCTTCTACTGATGATTTCGAAGTGGAAACCATATCTGAAA-TCATGGTTCCGTTTCA 59
||||||||||| ||||||| |||| | ||||| || ||| ||| | ||||||||||
Sbjct 21 ATGTCTTCTAC---TGATTTCCAAGTAGCCACCATGCCT-AAACTCACGTTTCCGTTTCA 76
Query 60 TCATCATCCTTTATCAAGTTATGCTTCTGAATTTTTGACTTCTT---GCTCTTTGTGC-C 115
|||||||||||||||||||||| ||| | || | | | |||||| ||||||||||| |
Sbjct 77 TCATCATCCTTTATCAAGTTATACTTTTCAACTATGGCCTTCTTTTTGCTCTTTGTGCTC 136
Query 116 TTTTCTCT-ACGTTTCTAG---G-AGA-A-ATA--GTCACTCGCATCAGA-TATCAGTGT 165
||||| || || | ||||| | | | | ||| ||||||| ||| || ||||| |||
Sbjct 137 TTTTC-CTGACATCTCTAGTTTGCAAAGACATACAGTCACTCACAT-AGGCTATCACTGT 194
Query 166 ATGGATTGCGGCTTGAAGTTACACGACGAATGCATCAACAGCCTTTCCCTCAACCGACCC 225
| |||||||||| ||||||| ||| | |||||| | || || | ||||||| | ||
Sbjct 195 ACGGATTGCGGCATGAAGTTGCACAAAGAATGCGTTGACCTTCTCTACCTCAACT-AGCC 253
Query 226 -TTTCTGTGCAATCACA 241
||||||||||||||||
Sbjct 254 ATTTCTGTGCAATCACA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5