BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54062.1
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917056 jgi|Araly1|917056|Al_scaffold_0008_1807 632 1e-180
Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805 568 3e-161
Ahg495450 jgi|Araly1|495450|fgenesh2_kg.8__1266__AT5G53742.1 448 4e-125
Ahg917075 jgi|Araly1|917075|Al_scaffold_0008_1826 381 4e-105
Ahg495500 jgi|Araly1|495500|fgenesh2_kg.8__1316__AT5G53742.1 350 1e-95
> Ahg917056 jgi|Araly1|917056|Al_scaffold_0008_1807
Length=642
Score = 632 bits (342), Expect = 1e-180
Identities = 555/652 (85%), Gaps = 38/652 (6%)
Strand=Plus/Plus
Query 65 ATGGAAGGTA-AGATCCAAGC-TCTTCTCTCGACGATTCTAGTTGTGACTTTGTGTGCCA 122
|||||||||| | || ||||| |||| |||| | ||||||||| ||| || |||||||||
Sbjct 1 ATGGAAGGTACAAAT-CAAGCTTCTT-TCTCCATGATTCTAGTCGTGGCTCTGTGTGCCA 58
Query 123 CTACTTTAGTGAAGCCCGGGCTAGCTC-AACT-C-CCT-ACCAGTGCTGGGTTTTC-T-C 176
||||| || ||| ||| ||| |||| | | | | | | | || | || | ||| | | |
Sbjct 59 CTACTCTATTGAGGCCGGGGATAGC-CGAGGTGCTCGTGA-CA-T-CTCGATTTCCTTCC 114
Query 177 -TACCCGGCTC-CCAAGTTGATCTCGCAAAATGTTGGTCATCGCTCCTCAACATTCACGG 234
| || || || |||| |||||||| ||||||||||||||||| || ||||| |||| ||
Sbjct 115 ATTCCTGGTTCTCCAA-TTGATCTCACAAAATGTTGGTCATCGATCTTCAACGTTCAAGG 173
Query 235 TTGCAATATCGAAATCTTTAAATCTGTTTTAACCGGTAAGTTTGAAAACGTTGGATCC-A 293
|||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| || |
Sbjct 174 TTGCAATATCGAAATCTTAAAATCTGCTTTAACCGGTAAGTTTGAAAATGTTGGA-CCAA 232
Query 294 CGTGCTGCAAGGCTTTTACAGAAGTGGATGCAAAGTGTTGGCCAAAAATGTTTCCGTTGA 353
| ||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 233 CATGCTGCAAGGCGTTTACGGAATTGGATGCAAAGTGTTGGCCAAAAATATTTCCGTTGA 292
Query 354 ATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATCTCAGGTGCACCAG 413
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 293 ATCCGTTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATGGCAGGTGCACCCG 352
Query 414 CACACAAGACACCGCAATTCCCTGTCATCCCTGG-TT-C-T---CC-GAT-C---G---- 458
|||||| |||||| |||||||||||||||||||| || | | || | | | |
Sbjct 353 CACACACGACACCTCAATTCCCTGTCATCCCTGGGTTTCCTATTCCTGGTTCTCCGGTCG 412
Query 459 ATCTCACAAAATGTTTGTCATCACTTGTCAACGTTCAAGGTTGTGTAACTGAAATCTACA 518
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 413 ATCTCACAAAATGTTTGTCATCACTTGTCAGCGTTCAAGGTTGCGTAACTGAAATCTACA 472
Query 519 AATCAGTTTTCACA-GGAAAGTGTGATAACGTAGGATTTATGTGCTGCAAGGCGTT-TAT 576
|||||||||||||| |||| || |||||| || ||| ||||| ||||||||||| |
Sbjct 473 AATCAGTTTTCACACGGAA-GTTTGATAATGTTGGACCAATGTGTTGCAAGGCGTTGTC- 530
Query 577 GGCTGTGGATGCAAAATGTTGGCCAAAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCT 636
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 531 GGCAATGGATGCAAAATGTTGGCCACAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCT 590
Query 637 CCTCAAAAATGTATGTTCTCGCATCAACACATCTGCTCCTACACACAAGTGA 688
|||||||| | ||||||||||||||||||| | |||||||||||||| |||
Sbjct 591 TCTCAAAAACGAATGTTCTCGCATCAACACAGCCGCTCCTACACACAAATGA 642
> Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805
Length=744
Score = 568 bits (307), Expect = 3e-161
Identities = 421/477 (88%), Gaps = 4/477 (1%)
Strand=Plus/Plus
Query 190 AGTTGATCTCGCAAAATGTTGGTCATCGCTCCTCAACATTCACGGTTGCAATATCGAAAT 249
|||||||||| |||||||||||||||| ||| ||||| |||| ||||||||||| |||||
Sbjct 120 AGTTGATCTCACAAAATGTTGGTCATCACTCTTCAACGTTCAAGGTTGCAATATTGAAAT 179
Query 250 CTTTAAATCTGTTTTAACCGGTAAGTTTGAAAACGTTGGATCCA-CGTGCTGCAAGGCTT 308
||| ||||||| |||||| ||||||||||||||||||||||||| | ||||||||||| |
Sbjct 180 CTTGAAATCTGCTTTAACGGGTAAGTTTGAAAACGTTGGATCCATC-TGCTGCAAGGCAT 238
Query 309 TTACAGAAGTGGATGCAAAGTGTTGGCCAAAAATGTTTCCGTTGAATCCATTATTCCCTC 368
|||| |||||||||||||| ||||||||||||||||||||| | ||||| |||||||||
Sbjct 239 TTACGGAAGTGGATGCAAATTGTTGGCCAAAAATGTTTCCGCTAAATCCGTTATTCCCTT 298
Query 369 CTCTTCTCAAGGATGGTTGCTCTCGCATCATCTCAGGTGCACCAGCACACAAGACACCGC 428
||||||| ||||||||||| |||| ||||| | ||| |||||| ||||||| | |||| |
Sbjct 299 CTCTTCTTAAGGATGGTTGTTCTCTCATCAGCGCAGCTGCACCCGCACACACGGCACCTC 358
Query 429 AATTCCCTGTCATCCCTGGTTCTCCGATCGATCTCACAAAATGTTTGTCATCACTTGTCA 488
||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 359 AATTCTCTGTCATCCCTGGTTCTTCGATCGATCTCACTAAATGTTTGTCATCACTTGTCA 418
Query 489 ACGTTCAAGGTTGTGTAACTGAAATCTACAAATCAGTTTTCACAGGAAAGTGTGATAACG 548
||||||||||||||||||| |||||| |||||||||||||||||||||| | || ||| |
Sbjct 419 ACGTTCAAGGTTGTGTAACAGAAATCCACAAATCAGTTTTCACAGGAAACTTTGGTAATG 478
Query 549 TAGGATTTATGTGCTGCAAGGCGTTTAT-GGCTGTGGATGCAAAATGTTGGCCAAAAATG 607
| ||| ||||||||||| |||||| | ||||||||||||||||||||||||| |||||
Sbjct 479 TTGGAGCAATGTGCTGCAAAGCGTTT-TCGGCTGTGGATGCAAAATGTTGGCCACAAATG 537
Query 608 TTTCCACTAAATCCGTTCTTCCCTCCTCTCCTCAAAAATGTATGTTCTCGCATCAAC 664
||||| ||||||| |||||| ||| ||| |||||| | ||||||||||| ||||
Sbjct 538 TTTCCGCTAAATCGGTTCTTTCCTTTTCTTCTCAAATCTAAATGTTCTCGCACCAAC 594
> Ahg495450 jgi|Araly1|495450|fgenesh2_kg.8__1266__AT5G53742.1
Length=344
Score = 448 bits (242), Expect = 4e-125
Identities = 312/346 (90%), Gaps = 4/346 (1%)
Strand=Plus/Plus
Query 341 ATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 400
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTCCGTTGAATCCATTGTTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC 60
Query 401 TCAGGTGCACCAGCACACAAGACACCGCAATTCCCTGTCATCCCTGGTTCTCCGATCGAT 460
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TCAGGTGCACCCGCACACACGACACCGCAATTCCCTTTCATCCCTGGTTCTCCGATCGAC 120
Query 461 CTCACAAAATGTTTGTCATCACTTGTCAACGTTCAAGGTTGTGTAACTGAAATCTACAAA 520
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 121 CTCACAAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGTGTAACTGAAATCCACAAA 180
Query 521 TCAGTTTTCACAGGAAAGTGTGATAACGTAGGATTTATGTGCTGCAAGGCGTTTATG-GC 579
|||||||||||||||||| |||||| || | | |||||||||||||||||| | ||
Sbjct 181 GCAGTTTTCACAGGAAAGTTTGATAATGTTGCACCAATGTGCTGCAAGGCGTTT-TCAGC 239
Query 580 TGTGGATGCAAAATGTTGGCCAAAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCTCCT 639
||||||||| |||||||||||| |||||||||| | ||||| |||||||||||||| ||
Sbjct 240 TGTGGATGCCAAATGTTGGCCACAAATGTTTCCGTTTAATCCATTCTTCCCTCCTCTTCT 299
Query 640 CAAAAATGTATGTTCTCGCATCAAC-ACATCTGCTCCTACACACAA 684
|| |||| ||||||||| |||||| | | | |||||||||||||
Sbjct 300 GAAGAATGAATGTTCTCGTATCAACGA-AGCCACTCCTACACACAA 344
> Ahg917075 jgi|Araly1|917075|Al_scaffold_0008_1826
Length=324
Score = 381 bits (206), Expect = 4e-105
Identities = 263/289 (91%), Gaps = 10/289 (3%)
Strand=Plus/Plus
Query 196 TCTCGCAAAATGTTGGTCATCGCTCCTCAACATTCACGGTTGC-AATATCGAAATCTTTA 254
||||||||||||||||||||||||| || ||||||| |||||| || ||||||||||||
Sbjct 1 TCTCGCAAAATGTTGGTCATCGCTCATC-ACATTCAAGGTTGCGAA-GTCGAAATCTTTA 58
Query 255 AATCTGTTTTAACCGGTAAGTTTGAAAACGTTGGATCC-ACGTGCTGCAAGGCTTTTACA 313
|||||||||||||||||||| |||||||||||||| || || ||||||||||| |||||
Sbjct 59 AATCTGTTTTAACCGGTAAGATTGAAAACGTTGGA-CCAACATGCTGCAAGGCGTTTAC- 116
Query 314 G-AAGTGGATGCAAAGTGTTGGCCAAAAATGTTTCCGTTGAATCCATTATTCCCTCCTCT 372
| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 117 GAAAGTGGATGCAAACTGTTGGCCAAAAATGTTTTCGTTGAATCCGTTATTCCCTCCTCT 176
Query 373 TCTCAAGGATGGTTGCTCTCGCATCATCTCAGGTGCACCAGCA-CACA-A-GACACCGCA 429
|||||||||||||||||||||||||||| |||||||||| || |||| | |||||| ||
Sbjct 177 TCTCAAGGATGGTTGCTCTCGCATCATCGCAGGTGCACCCGCTGCACACACGACACCTCA 236
Query 430 ATTCCCTGTCATCCCTGGTTCTCCGATCGATCTCACAAAATGTTTGTCA 478
|||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 237 GTTCCCTGTCATCTCTGGTTCTCCGGTCGATCTCACAAAATGTTTGTCA 285
> Ahg495500 jgi|Araly1|495500|fgenesh2_kg.8__1316__AT5G53742.1
Length=528
Score = 350 bits (189), Expect = 1e-95
Identities = 254/286 (89%), Gaps = 2/286 (1%)
Strand=Plus/Plus
Query 404 GGTGCACCAGCACACAAGACACCGCAATTCCCTGTCATCCCTGGTTCTCCGATCGATCTC 463
|||||||| ||||||| |||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 244 GGTGCACCCGCACACACGACACCTCAATTCCCTTTCATCCCTGGTTCTCCGAACGATCTC 303
Query 464 ACAAAATGTTTGTCATCACTTGTCAACGTTCAAGGTTGTGTAACTGAAATCTACAAATCA 523
|||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||
Sbjct 304 ACAAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGCGTAAGTGAAATCCACAAATCA 363
Query 524 GTTTTCACAGGAAAGTGTGATAACGTAGGATTTATGTGCTGCAAGGCGTTTATG-GCTGT 582
|||||||||||||||| || ||| || ||| |||||||||||||||||| | |||||
Sbjct 364 GTTTTCACAGGAAAGTTTGGTAATGTTGGACCAATGTGCTGCAAGGCGTTT-TCAGCTGT 422
Query 583 GGATGCAAAATGTTGGCCAAAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCTCCTCAA 642
||||||||||| ||||||| | |||||||| | |||||||||||||||||||| |||||
Sbjct 423 GGATGCAAAATATTGGCCACAGATGTTTCCGTTTAATCCGTTCTTCCCTCCTCTTCTCAA 482
Query 643 AAATGTATGTTCTCGCATCAACACATCTGCTCCTACACACAAGTGA 688
|||| |||||||||||||||| || | |||||||||||||||||
Sbjct 483 GAATGAATGTTCTCGCATCAACGCAGCCACTCCTACACACAAGTGA 528
Score = 145 bits (78), Expect = 6e-34
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 318 TGGATGCAAAGTGTTGGCCAAAAATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCA 377
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 2 TGGATGCAAAGTGTTGGCCAAAACTGTTTCCGTTGAATCCGTTATTCCCTCCTCTTCTTA 61
Query 378 AGGATGGTTGCTCTCGCATCATCTCAG 404
|||||||||||||||||||||||||||
Sbjct 62 AGGATGGTTGCTCTCGCATCATCTCAG 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30727071102
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5