BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54064.2
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331749 jgi|Araly1|331749|fgenesh1_pm.C_scaffold_8001092 861 0.0
Ahg918359 jgi|Araly1|918359|Al_scaffold_0008_3110 446 3e-124
Ahg951700 jgi|Araly1|951700|scaffold_11200001.1 388 5e-107
> Ahg331749 jgi|Araly1|331749|fgenesh1_pm.C_scaffold_8001092
Length=1899
Score = 861 bits (466), Expect = 0.0
Identities = 596/656 (91%), Gaps = 19/656 (3%)
Strand=Plus/Plus
Query 234 CCCGATGG-GACGGTAAACTTCAACAACGTAGAGTATATAGCTCGTGTTGGTTGGGTGTT 292
|||||||| | ||||||||||||||||||||||||||||||||| | | ||| | | |
Sbjct 4 CCCGATGGTG-CGGTAAACTTCAACAACGTAGAGTATATAGCTC--G-T-GTT--G-G-T 54
Query 293 TGGGTTACTTATGCTGAGAAAGTGCCTCTCTGGAATCCTAAAACTGGTAAGCCTACAGAT 352
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 55 TGGGTTACTTATGCTGAGAAAGTGCCTCTATGGAATCCTAAAACTGGTAAGTCTACGGAT 114
Query 353 TTTAGTACCAGTTTCTCCTTTAAG-ATTGATACCCGTAACCTTTAGAATTACGGTCATGG 411
|||| ||||||||| | |||| || ||||||||||||||||||| |||||||||||||||
Sbjct 115 TTTAATACCAGTTT-TTCTTTCAGAATTGATACCCGTAACCTTTCGAATTACGGTCATGG 173
Query 412 GATCTGCTTCTTTCTTGCTCCTTTGCGG-ATTCAACTTCCTGTGAACTCAGCTGGTGATT 470
||||||||| |||||||||||| || || |||||||| ||||||||||||||||||| ||
Sbjct 174 GATCTGCTTTTTTCTTGCTCCTGTG-GGAATTCAACTCCCTGTGAACTCAGCTGGTGGTT 232
Query 471 TCTTGGGTCtttttttCTCGAATCG-AGAGCTACGCATCTTCGTTTCCGCTGGTTCATAT 529
||||||||| ||||| ||||||||| ||| | || ||||||||||||||| ||||||||
Sbjct 233 TCTTGGGTC-TTTTTACTCGAATCGAAGATC-ACATATCTTCGTTTCCGCTTGTTCATAT 290
Query 530 CGAGTTTGACTCATTCAATAACCAAGAATGGGATCCTACCACTGTTGGATCTCATGTGGG 589
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||
Sbjct 291 TGAGTTTGACTCATTCAGTAACAAAGAATGGGATCCTACAACTGTTGGATCTCATGTGGG 350
Query 590 AATCAATAATAACTCTCTTGTTTCGTCTAACTACACTTCTTGGAATGCAAGCTCACATAT 649
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 351 AATCAATAATAACTCGCTTGTTTCGTCTAACTACACCTCTTGGAATGCAAGCTCACACAG 410
Query 650 CCAAGATGTTGGTCATGCACATATCTCCTATGACTCTGTTACTAAGAATTTGAGTGCGTC 709
||||||| ||||||||||| | ||||||||| |||||||||||||||| ||||||| |||
Sbjct 411 CCAAGATATTGGTCATGCAAAGATCTCCTATAACTCTGTTACTAAGAACTTGAGTGTGTC 470
Query 710 TTGGGCTTATGAATTAACCTCTGATCCTCAGGAGAGTTTAGGCATTTCCTATATCATTGA 769
|||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||
Sbjct 471 TTGGGCTTATGAATTAACGTCTGATCCTCTGGAGAGTGTAGGCATTTCTTATATCATTGA 530
Query 770 TCTTGCAAAGGTTTTGCCACCACATGTTACGGTCGGGTTTTCAGCCGCTACTGGATCGGT 829
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 531 TCTTGCAAAGGTTTTGCCACCAGATGTTACGGTCGGGTTTTCAGCCGCTACTGGATCAAA 590
Query 830 CACAGAGGGACATA-AGCTTTTATCATGGGAGTTCATCTCAAGTTTGGATATTGAG 884
|| ||||||||||| | ||||||||||||||||||| |||||||||||||| ||||
Sbjct 591 CATAGAGGGACATAGA-CTTTTATCATGGGAGTTCAGCTCAAGTTTGGATAGTGAG 645
Score = 479 bits (259), Expect = 3e-134
Identities = 316/343 (92%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 882 GAGGTTTGTTTATAAGGATCTTGTTTTAGCTACCAACAGATTCTCAGCCCAGAGGAAGCT 941
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 822 GAGGTTTGTTTATAAGGATCTTGTTATAGCAACCAACAGATTCTCAGCCCAGAGGAAGCT 881
Query 942 TGGTGAAGGAGGGTTTGGGGCAGTTTATAGATGG-TACTTGAACGAAATAGATATGATGG 1000
||||||||||||||||| || ||||||||| || |||||||||||||| ||||||||||
Sbjct 882 GGGTGAAGGAGGGTTTGGAGCCGTTTATAGA-GGTTACTTGAACGAAATGGATATGATGG 940
Query 1001 TTGCTGTGAAGAAATTGTCTGGTGGTTCCAAGCAGTGAAAGAAAGAGTTTGTAACCGAAG 1060
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 941 TTGCAGTGAAGAAATTGTCTGGTGGTTCCAAGCAGGGAAAGAAAGAGTTTGTAACCGAAG 1000
Query 1061 TTAAGATCATTAGCAAACTGCGTCATCGAAACCTGGTGCAGCCCATTGTGTTGGTGTAAT 1120
|||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||
Sbjct 1001 TTAAGATCATTAGCAAACTGCGACATCGAAACCTGGTGCAACTCATTG-GTTGGTGTAAT 1059
Query 1121 GAAAAAGATGAGTATTTGCTTATATAGGAGTTCATGCCGAATGGTAGCTTGGACACTCAC 1180
|||||| | |||||||| || ||||| ||||||||||||||||||||| |||||||||||
Sbjct 1060 GAAAAAAACGAGTATTTACTGATATATGAGTTCATGCCGAATGGTAGCCTGGACACTCAC 1119
Query 1181 CTCTTTGAGAAAAGACCCCTTATCTCACCTAGGACACACAGAT 1223
||||||| ||||||||||| ||||| ||| ||||| || |||
Sbjct 1120 CTCTTTGGGAAAAGACCCC--ATCTCTCCTGGGACATAC-GAT 1159
Score = 217 bits (117), Expect = 2e-55
Identities = 144/157 (92%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 1222 ATCTTCACGGA-GAGGGAGATCGGTGTGTGTTGCATAGGGACATCAAGGCAAGCAATATC 1280
||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1196 ATCTTCA-TGAGGAAGGAGATCGGTGTGTATTGCATAGGGACATCAAGGCAAGCAATATC 1254
Query 1281 ATGTTGGACATCAATTTCAATGTAAAAGTAGGTGACTTTGGGCTGGCTCGATTGATGGAC 1340
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1255 ATGTTGGACATCAATTTCAATGTAAAAGTAGGTGACTTTGGACTGGCTCGATTGATGGAC 1314
Query 1341 CATGAACTAGGCTCACATACAATAGCGCTAGCAGGAA 1377
|||| |||||| || ||||||| | | |||||||||
Sbjct 1315 CATGGACTAGGTTCCCATACAACGGGGATAGCAGGAA 1351
> Ahg918359 jgi|Araly1|918359|Al_scaffold_0008_3110
Length=2070
Score = 446 bits (241), Expect = 3e-124
Identities = 485/601 (81%), Gaps = 24/601 (4%)
Strand=Plus/Plus
Query 292 TTGGGTTACTTATGCTGAGAAAGTGCCTCTCTGGAATCCTAAAACTGGTAAGCCTACAGA 351
|||| |||||||| | |||| |||||| | |||| || || ||||||||| || || |
Sbjct 279 TTGGATTACTTATTCCAAGAAGGTGCCTATATGGAGTCATAGGACTGGTAAGGCTTCAAA 338
Query 352 TTTTAGTACCAGTTTCTCCTTTAAGATTGATACCCGTAACCTTT-AGAATTACGGTCATG 410
||||| |||||||||||||| || || ||| | |||||||||| || | | |||||||
Sbjct 339 TTTTAACACCAGTTTCTCCTTCAAAATCGATGCTCGTAACCTTTCAGCA-GATGGTCATG 397
Query 411 GGATCTGCTTCTTTCTTGCTCCTTTGCGGA-TTCAACTTCCTGTGA-ACTCAGCTGGTGA 468
| ||||| ||||||||||||||| || ||| |||||| |||| | |||||| |||||
Sbjct 398 GAATCTGTTTCTTTCTTGCTCCTATG-GGAGCTCAACTACCTG-CATACTCAGTTGGTGG 455
Query 469 TTTCTTGGGTCtttttttCTCGAATCG-AGAGCTACGCATCTTCGTTTCCGCTGGTTCAT 527
||||||| | || || |||||| | | | ||| | |||||||||||||| ||||||
Sbjct 456 TTTCTTGAAT-TTGTTCACTCGAA-AGAATAATTACTCGTCTTCGTTTCCGCTTGTTCAT 513
Query 528 ATCGAGTTTGACTCATTCAATAA-CCAAGAATGGGATCCT-ACCACTGTTGGATCTCATG 585
|||| |||||| ||||||| || || || |||||||||| | | ||||||||||||||
Sbjct 514 GTCGAATTTGACACATTCAACAATCC-AGGATGGGATCCTAAGGA-TGTTGGATCTCATG 571
Query 586 T-GGGAATCAATAATAACTCTCTTGTTTCGTCTAACTACACTTCTTGGAATGCAAGCTCA 644
| ||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 572 TCGGG-ATCAATAACAACTCTCTTGTTTCTTCCAACTACACTTCTTGGAATGCAAGCTCA 630
Query 645 CATATCCAAGATGTTGGTCATGCACATATCTCCTATGACTCTGTTACTAAGAATTTGAGT 704
|| | ||||||| ||||||||||| | ||||| ||||| ||||| ||||||||||| |||
Sbjct 631 CACAACCAAGATATTGGTCATGCAAAGATCTCTTATGATTCTGTGACTAAGAATTTAAGT 690
Query 705 GCGTCTTGGGCTTATGAATTAAC--C-TCTGATCCTCAGGAGAGTTTAGGCATTTCCTAT 761
| | ||||||||||||| |||| | ||||||||| |||| |||| | || |||| ||
Sbjct 691 GTGACTTGGGCTTATGAGCTAACAACCTCTGATCCTAAGGAAAGTTCAAGCCTTTCTTAC 750
Query 762 ATCATTGATCTTGCAAAGGTTTTGCCACCACATGTTACGGTCGGGTTT-TCAGCCGCTAC 820
||||| || || |||||||| ||||| || | |||| | |||||||| | ||| ||| |
Sbjct 751 ATCATCGACCTCACAAAGGTTCTGCCATCAGAAGTTATGTTCGGGTTTAT-AGCTGCTGC 809
Query 821 TGGATCGGTCACAGAGGGACATA-AGCTTTTATCATGGGAGTTCA-TCTCAAGTTTGGAT 878
|||| | |||||||| ||||| | ||||||||||||||| ||| | ||||||||||||
Sbjct 810 TGGAACAAACACAGAGGAACATAGA-CTTTTATCATGGGAGCTCAGT-TCAAGTTTGGAT 867
Query 879 A 879
|
Sbjct 868 A 868
> Ahg951700 jgi|Araly1|951700|scaffold_11200001.1
Length=770
Score = 388 bits (210), Expect = 5e-107
Identities = 425/528 (80%), Gaps = 18/528 (3%)
Strand=Plus/Plus
Query 292 TTGGGTTACTTATGCTGAGAAAGTGCCTCTCTGGAATCCTAAAACTGGTAAGCCTACAGA 351
|||| |||||||| | |||| |||||| | |||| || || ||||||||| || || |
Sbjct 206 TTGGATTACTTATTCCAAGAAGGTGCCTATATGGAGTCATAGGACTGGTAAGGCTTCAAA 265
Query 352 TTTTAGTACCAGTTTCTCCTTTAAGATTGATACCCGTAACCTTT-AGAATTACGGTCATG 410
||||| |||||||||||||| || || ||| | |||||||||| || | | |||||||
Sbjct 266 TTTTAACACCAGTTTCTCCTTCAAAATCGATGCTCGTAACCTTTCAGCA-GATGGTCATG 324
Query 411 GGATCTGCTTCTTTCTTGCTCCTTTGCGGA-TTCAACTTCCTGTGA-ACTCAGCTGGTGA 468
| ||||| ||||||||||||||| || ||| |||||| |||| | |||||| |||||
Sbjct 325 GAATCTGTTTCTTTCTTGCTCCTATG-GGAGCTCAACTACCTG-CATACTCAGTTGGTGG 382
Query 469 TTTCTTGGGTCtttttttCTCGAATCG-AGAGCTACGCATCTTCGTTTCCGCTGGTTCAT 527
||||||| | || || |||||| | | | ||| | |||||||||||||| ||||||
Sbjct 383 TTTCTTGAAT-TTGTTCACTCGAA-AGAATAATTACTCGTCTTCGTTTCCGCTTGTTCAT 440
Query 528 ATCGAGTTTGACTCATTCAATAA-CCAAGAATGGGATCCT-ACCACTGTTGGATCTCATG 585
|||| |||||| ||||||| || || || |||||||||| | | ||||||||||||||
Sbjct 441 GTCGAATTTGACACATTCAACAATCC-AGGATGGGATCCTAAGGA-TGTTGGATCTCATG 498
Query 586 T-GGGAATCAATAATAACTCTCTTGTTTCGTCTAACTACACTTCTTGGAATGCAAGCTCA 644
| ||| |||||| | |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 499 TCGGG-ATCAATGACAACTCTCTTGTTTCTTCCAACTACACTTCTTGGAATGCAAGCTCA 557
Query 645 CATATCCAAGATGTTGGTCATGCACATATCTCCTATGACTCTGTTACTAAGAATTTGAGT 704
|| | ||||||| ||||||||||| | ||||| ||||| ||||| ||||||||||| |||
Sbjct 558 CACAACCAAGATATTGGTCATGCAAAGATCTCTTATGATTCTGTGACTAAGAATTTAAGT 617
Query 705 GCGTCTTGGGCTTATGAATTAAC--C-TCTGATCCTCAGGAGAGTTTAGGCATTTCCTAT 761
| | ||||||||||||| |||| | ||||||||| |||| |||| | || |||| ||
Sbjct 618 GTGACTTGGGCTTATGAGCTAACAACCTCTGATCCTAAGGAAAGTTCAAGCCTTTCTTAC 677
Query 762 ATCATTGATCTTGCAAAGGTTTTGCCACCACATGTTACGGTCGGGTTT 809
||||| || || |||||||| ||||| || | |||| | ||||||||
Sbjct 678 ATCATCGACCTCACAAAGGTTCTGCCATCAGAAGTTATGTTCGGGTTT 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5