BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54070.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495484 jgi|Araly1|495484|fgenesh2_kg.8__1300__AT5G54070.1 1134 0.0
Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1 159 4e-38
Ahg950051 jgi|Araly1|950051|scaffold_801938.1 93.5 4e-18
Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805 58.4 2e-07
> Ahg495484 jgi|Araly1|495484|fgenesh2_kg.8__1300__AT5G54070.1
Length=1044
Score = 1134 bits (614), Expect = 0.0
Identities = 895/1020 (88%), Gaps = 61/1020 (6%)
Strand=Plus/Plus
Query 10 AAATAGAAACGGTGTAGGAAGCTACTATGACGGCAATTCCAAACGTCGTCGATATTGAAT 69
|||||||||||| ||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 3 AAATAGAAACGGCGTAGGAAGCTACTATGACGGCGATTCCAAATGTTATCGATATTGAA- 61
Query 70 CTTCTTCCTCTTCGCTTTGTCAAGAGACGGCAACGGAGACCGTCACCGTTGAAAGAGGCT 129
||||| ||||||||||||| | ||| | || | | ||| ||| | | | |
Sbjct 62 --TCTTCGTCTTCGCTTTGTC-A-AGA--G--AC-G-G--TGTCTCCG-T----CA-G-T 102
Query 130 CGTCTGATTCATCTTCAAAGCCAGACGACGTCGTTTTACTAATCAAGGAAGAGGAGGATG 189
|| ||| | || | |||| |||| ||||||| | |||||||||||||||||||||||
Sbjct 103 TGT-TGA--GA-CTGCGAAGCTAGACCACGTCGTGTCACTAATCAAGGAAGAGGAGGATG 158
Query 190 ACGCCGTTAACTTGTCACTTGGTTTTTGGAAATTGCACGAGATAGGTTTAATAACACCGT 249
||| || || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 159 ACGTCG-----TT-TCACTTGGTTTTTGGAAATTGCACGAGATAGGTTTAATTACACCGT 212
Query 250 TCTTGAGAAAGACGTTTGAGATCGTCGATGACAAAGTAACAGACCCGGTTGTATCATGGA 309
|||||||||||||||||||||| || || |||| ||||||||||||||||||||||||||
Sbjct 213 TCTTGAGAAAGACGTTTGAGATAGTTGAGGACACAGTAACAGACCCGGTTGTATCATGGA 272
Query 310 GCCCGACCCGTAAAAGCTTTATCATTTGGGATTCTTACGAGTTCTCAGAGAATCTACTTC 369
||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 273 GCCTGACCCGTAAAAGCTTTATCATTTGGGATTCTTACGACTTCTCGGAGAATCTTCTTC 332
Query 370 CCAAATACTTCAAGCACAAGAACTTCTCCAGTTTTATTCGTCAGCTTAACTCTTACGGTT 429
| |||||||||||||||||||||||||||||||| | || ||||||||||| || ||||
Sbjct 333 CTAAATACTTCAAGCACAAGAACTTCTCCAGTTTCCTCCGCCAGCTTAACTCCTATGGTT 392
Query 430 TTAAAAAGGTCGATTCAGATAGGTGGGAATTTGCTAACGAAGGGTTTCAAGGAGGGAAGA 489
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 TTAAAAAGGTTGATTCAGATAGGTGGGAATTTGCTAACGAAGGGTTTCAAGGAGGGAAGA 452
Query 490 AACATTTGCTTAAGAACATCAAGAGGAGAAGCAAAAACACTAAATGTTGTAACAAGGAAG 549
|| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 453 AATATTTGCTTAAGAACATCAAGAGGAGAAGCAAAAGTACTAAATGT---AACAAGGAAG 509
Query 550 CGAG------TACCACCACGAC-A--GAGACTGAGGTTGAGTCATTGAAGGAGGAACAGA 600
|||| ||||||||| || | ||||| |||||||||| |||||||||||||||||
Sbjct 510 CGAGCACCACTACCACCACCACCACAGAGACAGAGGTTGAGTTATTGAAGGAGGAACAGA 569
Query 601 GTCCAATGAGATTGGAGATGTTGAAGCTGAAACAACAACAAGAAGAATCTCAACATCAGA 660
|||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 570 GTCCAATGAGATCGGAGATGTTGAAGTTGAAACAACAACAGGAAGAATCTCAACATCAGA 629
Query 661 TGGTCACTGTGCAGGAGAAGATCCACGGAGTTGA-TACCGAACAACAGCATATGCTTAGT 719
|||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 630 TGGTCACTGTGCAGGAGAAGATCCACGGAGTTGAAT-CCGAACAACAACATATGCTTAGT 688
Query 720 TTCTTTGCAAAGTTGGCTAAAGATCAAAGATTTGTAGAGAGACTGGTGAAGAAGAGAAAG 779
|||||||||||||||| |||||||||||||||||| ||||| ||| |||| ||||| |||
Sbjct 689 TTCTTTGCAAAGTTGGTTAAAGATCAAAGATTTGTGGAGAGGCTGTTGAAAAAGAGGAAG 748
Query 780 ATGAAA-ATACAGAGAGAGCTAGAAGCAGCTGAATTCGTGAAGAAGCTCAAGTTGCTTCA 838
|||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 749 ATGAAACA-ACAGAGAGAGCTCCAAGCAGCTGAATTCGTGAAGAAGCTCAAGTTGCTTCA 807
Query 839 GGATCAAGAAACTCAAAAGAACTTGTTAGATGTAGAAA-------G---A---GA-A-TT 883
|||||||||||||||||| |||||| |||||||||||| | | || | ||
Sbjct 808 GGATCAAGAAACTCAAAACAACTTGCTAGATGTAGAAAACCATCTGGTCATTAGAGAATT 867
Query 884 TATGGCCATGGCTGCAACAGAACACAATCCCGAGCCTGACATTTTGGTGAACAATCAAAG 943
||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||| ||||
Sbjct 868 TATGGCCATGGCTGCAACACAACACAATCCCAAGCCTGATATTTTGATGAACAATGAAAG 927
Query 944 CGGGAATACGAGATGTCAGCTTAACTCAGAGGACCTACTTGTTGACGGTGGCTCAATGGA 1003
|||||||| |||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 928 CGGGAATAGGAGATGTCAGCTTAACACAGAGGACCTACTTGTTGACGGTGGTTCGATGGA 987
> Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1
Length=954
Score = 159 bits (86), Expect = 4e-38
Identities = 91/93 (98%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 1365 CGCACGGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCT-CTTGAGAAATCAAGGAAA 1423
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 92 CGCACGGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCCTT-AGAAATCAAGGAAA 34
Query 1424 CAGAGGTACGAGCCTATAGAACAGATCCTGTTC 1456
|||||||||||||||||||||||||||||||||
Sbjct 33 CAGAGGTACGAGCCTATAGAACAGATCCTGTTC 1
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Minus
Query 1332 CTGTCAGACCGCCGTGCGACCACCCCGGCAAG 1363
||||||||||||||||||||||||||||||||
Sbjct 202 CTGTCAGACCGCCGTGCGACCACCCCGGCAAG 171
> Ahg950051 jgi|Araly1|950051|scaffold_801938.1
Length=328
Score = 93.5 bits (50), Expect = 4e-18
Identities = 50/50 (100%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1366 GCACGGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 1415
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GCACGGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 328
> Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805
Length=744
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1365 CGCACGGTCATGGTTCATCAACCAGGGTTAA 1395
|||||||||||||||||||||||||||||||
Sbjct 714 CGCACGGTCATGGTTCATCAACCAGGGTTAA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5