BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54075.1

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1         318    1e-86
  Ahg950051 jgi|Araly1|950051|scaffold_801938.1                        274    3e-73
  Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805                    189    1e-47


> Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1
Length=954

 Score =  318 bits (172),  Expect = 1e-86
 Identities = 195/205 (95%), Gaps = 5/205 (2%)
 Strand=Plus/Plus

Query  115  GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTCAAG-AGACAGGC  173
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  1    GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCT-AAGGAGACAGGC  59

Query  174  CCTTAACCCTGGTTGATGAACCATGACCGTGCGG-CTAGAGCGTGATTGACGGCTACGAT  232
            |||||||||||||||||||||||||||||||||  | ||||||||||| |||||||||||
Sbjct  60   CCTTAACCCTGGTTGATGAACCATGACCGTGCGATC-AGAGCGTGATTAACGGCTACGAT  118

Query  233  CGTCCTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTCTACCTTGCCG  292
            |||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct  119  CGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGT-CTTCCTTGCCG  177

Query  293  GGGTGGTCGCACGGCGGTCTGACAG  317
            |||||||||||||||||||||||||
Sbjct  178  GGGTGGTCGCACGGCGGTCTGACAG  202


> Ahg950051 jgi|Araly1|950051|scaffold_801938.1
Length=328

 Score =  274 bits (148),  Expect = 3e-73
 Identities = 161/167 (96%), Gaps = 2/167 (1%)
 Strand=Plus/Minus

Query  156  ATTTCTCAAGAGACAGGCCCTTAACCCTGGTTGATGAACCATGACCGTGCGGCT-AGAGC  214
            ||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||
Sbjct  328  ATTTCTCAAGAGACAGGCCCTTAACCCTGGTTGATGAACCATGACCGTGC-TATCAGAGC  270

Query  215  GTGATTGACGGCTACGATCGTCCTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGG  274
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  269  GTGATTGACGGCTACGATCGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGG  210

Query  275  CTCGGTTCTACCTTGCCGGGGTGGTCGCACGGCGGTCTGACAGGTTC  321
            ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  209  CTCGGTTCTACCTTGCCGGGGTGGTTGCACGGCGGTCTGACAGGTTC  163


> Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805
Length=744

 Score =  189 bits (102),  Expect = 1e-47
 Identities = 125/136 (92%), Gaps = 2/136 (1%)
 Strand=Plus/Minus

Query  176  TTAACCCTGGTTGATGAACCATGACCGTGCGG-CTAGAGCGTGATTGACGGCTACGATCG  234
            |||||||||||||||||||||||||||||||  | ||||||||||| ||||| ||||| |
Sbjct  744  TTAACCCTGGTTGATGAACCATGACCGTGCGATC-AGAGCGTGATTAACGGCCACGATTG  686

Query  235  TCCTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTCTACCTTGCCGGG  294
            || ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  685  TCTTCGGATGCATCTGGTGCTGTAGAGGATCGTTACTCGGCTCAGTTCTACCTTGCCGGG  626

Query  295  GTGGTCGCACGGCGGT  310
            ||||| ||||||||||
Sbjct  625  GTGGTTGCACGGCGGT  610



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12858433493


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5