BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54080.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950030 jgi|Araly1|950030|scaffold_801917.1 2298 0.0
Ahg495487 jgi|Araly1|495487|fgenesh2_kg.8__1303__AT5G54090.1 239 6e-62
> Ahg950030 jgi|Araly1|950030|scaffold_801917.1
Length=1428
Score = 2298 bits (1244), Expect = 0.0
Identities = 1369/1430 (96%), Gaps = 5/1430 (0%)
Strand=Plus/Plus
Query 33 TCTCTGATGTGAAGAAGCCATGGAAGAGAAGAAGAAGGAGCTTGAAGAGTTGAAGTATCA 92
||||||| ||||||||||||||||||||||||||||| | |||||||| || || |||||
Sbjct 2 TCTCTGACGTGAAGAAGCCATGGAAGAGAAGAAGAAGAAACTTGAAGACTTAAACTATCA 61
Query 93 ATCAGGTTTTGGTAACCACTTCTCATCGGAAGCAATCGCCGGAGCTTTACCGTTAGATCA 152
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 62 ATCAGGTTTTGGTAACCACTTCTCGTCGGAAGCAATCGCCGGAGCTTTGCCTTTAGATCA 121
Query 153 GAACAGTCCTCTTCTTTGTCCTTACGGTCTTTACGCCGAACAGATCTCCGGTACTTCTTT 212
|||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 122 GAACAGTCCTCTTCTTTGTCCTTATGGTCTCTACGCCGAGCAGATCTCTGGTACTTCTTT 181
Query 213 CACTTCTCCTCGCAAGCTCAATCAAAGAAGTTGGTTGTACCGGGTTAAACCATCGGTTAC 272
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 182 CACTTCTCCTCGCAAGCTCAATCAAAGAAGTTGGTTGTACCGGATTAAACCATCGGTTAC 241
Query 273 ACATGAACCGTTCAAGCCTCGTGTACCAGCTCATAAGAAGCTTGTGAGTGAGTTTGATGC 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACATGAACCGTTCAAGCCTCGTGTACCAGCTCATAAGAAGCTTGTGAGTGAGTTTGATGC 301
Query 333 ATCAAATAGTCGTACGAATCCGACTCAGCTTCGGTGGAGACCTGAGGATATTCCTGATTC 392
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 302 ATCGAATAGTCGTACGAATCCGACTCAGCTTCGGTGGAGACCTGAGGATATTCCTGAATC 361
Query 393 GGAGATTGATTTCGTTGATGGGTTATTTACCATTTGTGGAGCTGGAAGCTCGTTTCTTCG 452
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GGAGACTGATTTCGTTGATGGGTTATTTACCATTTGTGGAGCTGGAAGCTCGTTTCTTCG 421
Query 453 CCATGGCTTCGCTATTCACATGTATGTGGCTAACACAGGAATGAAAGACTCCGCATTTTG 512
|||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 422 CCATGGATTCGCTATTCACATGTATGTGGCTAACAAAGGAATGAAAGACTCTGCATTTTG 481
Query 513 CAACGCTGATGGTGACTTCTTGTTAGTTCCTCAAACAGGAAGGCTATGGATTGAAACTGA 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CAACGCTGATGGTGACTTCTTGTTAGTTCCTCAAACAGGAAGGCTATGGATTGAAACTGA 541
Query 573 GTGTGGAAGGCTTTTGGTAACTCCTGGTGAGATTGCTGTTATACCACAAGG-TTTCCGTT 631
||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||
Sbjct 542 GTGTGGAAGGCTTTTGGTATCTCCTGGTGAGATTGCTGTTATACCGCAAGGATTTC-GTT 600
Query 632 TCTCCATAGATTTACCGGATGGGAAGTCTCGTGGTTATGTTGCTGAAATCTATGGGGCTC 691
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 TCTCTGTAGATTTACCGGATGGGAAGTCGCGTGGTTATGTTGCTGAAATCTATGGGGCTC 660
Query 692 ATTTTCAGCTTCCTGATCTTGGACCAATAGGTGCTAATGGTCTTGCTGCATCAAGAGATT 751
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 661 ATTTTCAGCTTCCTGATCTTGGACCAATAGGTGCCAATGGTCTTGCTGCACCAAGAGATT 720
Query 752 TTCTTGCACCAACAGCATGGTTTGAGGATGGATTGCGGCCTGAATACACAATTGTTCAGA 811
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 TTCTTGCACCAACCGCGTGGTTTGAGGAAGGATTGCGGCCTGAATACACAATTGTTCAGA 780
Query 812 AGTTTGGCGGTGAACTCTTTACTGCTAAACAAGATTTCTCTCCATTCAATGTGGTTGCCT 871
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGTTTGGCGGTGAACTTTTTACTGCTAAACAAGATTTCTCTCCATTCAATGTGGTTGCCT 840
Query 872 GGCATGGCAATTACGTGCCTTATAAGTATGACCTGAAGAAGTTCTGTCCATACAACACTG 931
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 GGCATGGCAATTACGTGCCTTATAAGTATGACCTGCAGAAGTTCTGTCCATACAACACTG 900
Query 932 TGCTTTTAGATCATGGAGATCCATCTATAAATACAGTCCTTACAGCACCAACTGATAAAC 991
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 901 TCCTTTTAGATCATGGAGATCCATCTATAAATACAGTTCTTACAGCACCAACGGATAAAC 960
Query 992 CTGGTGTGGCCTTGCTTGATTTTGTCATATTTCCTCCTCGATGGTTGGTTGCTGAGCATA 1051
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 961 CTGGTGTGGCCTTGCTTGATTTTGTCATATTCCCTCCTCGATGGTTGGTTGCTGAGCATA 1020
Query 1052 CTTTTCGACCTCCTTACTATCATCGTAACTGCATGAGTGAATTTATGGGCTTAATCTACG 1111
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTTTTAGACCTCCTTACTACCATCGTAACTGCATGAGTGAATTTATGGGCTTAATCTACG 1080
Query 1112 GTGCATACGAGGCGAAAGCTGATGGATTTCTCCCTGGCGGTGCAAGTCTTCATAGCTGTA 1171
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1081 GTGCATACGAGGCCAAAGCTGATGGATTTCTCCCTGGCGGTGCAAGTCTTCACAGTTGTA 1140
Query 1172 TGACACCTCATGGTCCAGATACTACCACGTACGAGGCGACAATTGCTCGAGTAAATGCAA 1231
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1141 TGACACCTCATGGTCCAGATACTACCACATACGAGGCGACAATAGCTCGAGTAAATGCAA 1200
Query 1232 TGGCTCCTTCTAAACTCACAGGTACGATGGCTTTCATGTTCGAATCAGCATTGATCCCTA 1291
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1201 TGGCTCCTTCTAAACTCACAGGTACGATGGCTTTCATGTTTGAATCAGCCTTGATCCCTA 1260
Query 1292 GAGTCTGTCATTGGGCTCTGGAGTCTCCTTTCCTGGATCACGACTACTACCAGTGTTGGA 1351
||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1261 GAGTCTGCCATTGGGCTCTGGAGTCTCCTTTCCTCGACCACGACTACTACCAATGTTGGA 1320
Query 1352 TTGGCCTCAAGTCTCATTTCTCGCGCATA-AGCTTGGACAAGACAAATGTTGAATCAACA 1410
||||||||||||| |||||||| |||||| | |||| ||||||||||||||||| |||||
Sbjct 1321 TTGGCCTCAAGTCCCATTTCTCACGCATAGA-CTTGAACAAGACAAATGTTGAACCAACA 1379
Query 1411 GAGAAAGAACCAGGAGCTTCGGAGTAAAGAACACATAATTCACCTGCACC 1460
|||||||| |||||||||||||||||||||| ||| |||||||||| |||
Sbjct 1380 GAGAAAGAGCCAGGAGCTTCGGAGTAAAGAA-ACACAATTCACCTGGACC 1428
> Ahg495487 jgi|Araly1|495487|fgenesh2_kg.8__1303__AT5G54090.1
Length=2546
Score = 239 bits (129), Expect = 6e-62
Identities = 152/162 (94%), Gaps = 5/162 (3%)
Strand=Plus/Minus
Query 1492 ACCATATACTTGTATAAGAAAGAAGCATATAACAAGTACATATGTAATAATAAGTAGGTA 1551
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2546 ACCATATACTTGTATAAGAAAGAAGCATACAACAAGTACATATG---TAATAAGTAGGTA 2490
Query 1552 ATGTTTCTTCATGTCACTTTAAATACACT-ATTTGTACTCTGAAGCTAATATAACGGTGT 1610
|| ||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 2489 ATATTTCTTCATATCACTTTAATTACA-TCATTTGTACTCTGAAGCTAATATAACGGTGT 2431
Query 1611 TGGTTTAGATACTAATGAATATAACTGTGCCATTTAGATTCA 1652
||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2430 TGGTTTAGATACTTATGAATATAACTGTGCCATTTAGATTCA 2389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5