BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54095.1

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331754 jgi|Araly1|331754|fgenesh1_pm.C_scaffold_8001097           628    1e-179
  Ahg492035 jgi|Araly1|492035|fgenesh2_kg.7__1468__AT4G27580.1         106    2e-22 


> Ahg331754 jgi|Araly1|331754|fgenesh1_pm.C_scaffold_8001097
Length=408

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 384/406 (95%), Gaps = 0/406 (0%)
 Strand=Plus/Plus

Query  139  ATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATCCCTGAAACCGAAAAGACTGTT  198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATCCCTGAAACCGAAAAGACTGTT  60

Query  199  GTCGAGTCCAAGAACGTCGAAACTGAAACCGTATCTCAGGAGAAGGCAGATGAAGTTGTC  258
            ||||||||||||||||| ||||| |||||| || |||||||||||||||||||||| |||
Sbjct  61   GTCGAGTCCAAGAACGTTGAAACCGAAACCATACCTCAGGAGAAGGCAGATGAAGTCGTC  120

Query  259  ACAGAAAAGAAGGAAGAGTCTGCTGGAGATGTAGCAGAGACACCGAAGGAAGCTGAGGCA  318
             |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  121  GCAGAGAAGAAGGAAGAGTCTGCTGGAGATGTAGCAGAGACACAGAAGGAAGCTGAGGCA  180

Query  319  GCCAAACCGGCCGAGGCCGAGGCAGCTAAGCCTGCCGAGGCTGAGGTAGCCAAGCCTGCC  378
            ||||| ||||||||||| ||  |||||||||||||||||||||||| |||||||||||| 
Sbjct  181  GCCAAGCCGGCCGAGGCTGAACCAGCTAAGCCTGCCGAGGCTGAGGCAGCCAAGCCTGCG  240

Query  379  GAGGCTGAGGTAGCCAAGCCTGCTGAGGCTGAGGCAGCTCCAGAGGTGGTGAAGACCGAA  438
            |||| ||||  |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct  241  GAGGTTGAGCAAGCCAAGCCTGCTGAGGCTGAGCCAGCTCCAGAGGCGGTGAAGACCGAA  300

Query  439  GAAGCTGTCGTCGAAACTGTTAAGGAGACTGAGCCACCAAAACAAGAGGAGGCTGTTGTA  498
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  301  GAAGCTGTCGTCGAAACTGTTAAGGAGACTGAGCCAACAAAACAAGAGGAGGCTGTTGTA  360

Query  499  GCAGCCAATTACACCAAAACCAACGAAGAGCCTCTTGTAACCCTTT  544
            ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct  361  GCAGCCAATGATACCAAAACCAACGAAGAGCCTCTTGTAACCCTTT  406


> Ahg492035 jgi|Araly1|492035|fgenesh2_kg.7__1468__AT4G27580.1
Length=719

 Score =  106 bits (57),  Expect = 2e-22
 Identities = 95/112 (85%), Gaps = 7/112 (6%)
 Strand=Plus/Plus

Query  67   TTTTAGCTCCACAGTTCTTCCCATTGTGTAAATTTGTTTTCGTTT-CAAACCGATTTCTT  125
            |||| ||||||||| ||| |||| | ||| ||||| ||||| ||| |||||  || | ||
Sbjct  224  TTTTGGCTCCACAGCTCTCCCCA-T-TGT-AATTT-TTTTC-TTTCCAAACTAATCT-TT  277

Query  126  TCTATTAAACACCATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATC  177
            || || ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  278  TCAATCAAAAACTATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATC  329



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25008633552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5