BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54100.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950033 jgi|Araly1|950033|scaffold_801920.1 1956 0.0
Ahg945292 jgi|Araly1|945292|scaffold_701521.1 972 0.0
Ahg950104 jgi|Araly1|950104|scaffold_801991.1 451 6e-126
> Ahg950033 jgi|Araly1|950033|scaffold_801920.1
Length=1258
Score = 1956 bits (1059), Expect = 0.0
Identities = 1198/1263 (95%), Gaps = 18/1263 (1%)
Strand=Plus/Plus
Query 43 GTTAGTTACACAGCTTTCAACGATGAATCAGCTCGCGCTTTCAAGAT-C--CGGTTACAC 99
||||||||||||| |||||||||||||||| |||||||||||||||| | |||||||||
Sbjct 1 GTTAGTTACACAG-TTTCAACGATGAATCAACTCGCGCTTTCAAGATCCGGCGGTTACAC 59
Query 100 CGCCGCCGTGAGGTTTCTCCCTA-TGCTTTCCGCAGCTGTTCCGAAGATCTTATCATCTC 158
|||||||| | ||| ||||| | | |||||||||||||||||||||||| ||||||| |
Sbjct 60 GGCCGCCGTTAAGTTCCTCCC-ACTACTTTCCGCAGCTGTTCCGAAGATCATATCATCCC 118
Query 159 TCGCCGCCGCAT---------CCACCGTCCGCAACTTCAGCTCTACCGGAAGTCCTCTCA 209
| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 119 TTGCCGCCGCATCCACCACCACCACCGTCCGTAACTTCAGCTCTACCGGAAGTCCTCTCA 178
Query 210 CCAGCTACCAAATCAATAAACCTTCGCCGTCAAAATCCTTCACTTCCAGGCTTCTCCACC 269
||||||||| || ||| || || |||||| ||||||||||| |||||||||||||||| |
Sbjct 179 CCAGCTACCTAACCAAGAAGCCGTCGCCGGCAAAATCCTTCGCTTCCAGGCTTCTCCATC 238
Query 270 AATCCTCCTCCGCCGGTACTCCTCCGCAACAACTTTTCGGCGCCCGTAGCTTCTCATCTC 329
|||||| || |||| |||||| ||||||||||||| ||||| ||||| |||||||||||
Sbjct 239 AATCCT-CT--GCCGCTACTCCGCCGCAACAACTTTCCGGCGTCCGTAACTTCTCATCTC 295
Query 330 CCAGCAGTGATTTCAACAGCTACCACATTAATCCGCCGTCTAACTGGGGAATCCGAATCG 389
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 296 CCAGCAGTGATTTCAACAGCTACCACATTAATCCGCCGGCTAACTGGGGAATCCGAATCG 355
Query 390 TGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCACACGACTTTGCCGG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCACACGACTTTGCCGG 415
Query 450 CGGGGATTCACTTCCTTGTTCCGTTTGTGGATCGTATCGCTTATGTTCATTCTCTAAAGG 509
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 CGGGGATTCACTTCCTTGTTCCGTTTGTGGATCGTATTGCTTATGTTCATTCTCTAAAGG 475
Query 510 AAGAAGCGATTCCTATTGGTAATCAGACTGCGATTACAAAGGATAACGTTAGCATCCACA 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AAGAAGCGATTCCTATTGGTAATCAGACTGCGATTACAAAGGATAACGTTAGCATCCACA 535
Query 570 TCGATGGTGTTCTCTACGTTAAGATTGTGGATCCTAAGTTGGCTTCTTATGGCGTTGAGA 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCGATGGTGTTCTCTACGTTAAGATTGTGGATCCTAAGTTGGCTTCTTATGGCGTTGAGA 595
Query 630 ATCCGATCTATGCTGTTATGCAGTTGGCTCAGACTACAATGCGTAGTGAGCTCGGTAAAA 689
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 596 ATCCAATCTATGCTGTTATGCAGTTGGCTCAGACTACAATGCGTAGTGAGCTCGGGAAAA 655
Query 690 TTACTCTTGACAAGACTTTTGAGGAACGGGACACTCTCAATGAGAAGATTGTGGAAGCCA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTACTCTTGACAAGACTTTTGAGGAACGGGACACTCTCAATGAGAAGATTGTGGAAGCCA 715
Query 750 TCAATGTTGCTGCAAAAGATTGGGGTCTTCAGTGCCTTCGTTATGAGATCAGGGATATCA 809
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 716 TCAATGTTGCTGCAAAAGATTGGGGTCTTCAGTGTCTTCGTTATGAGATCAGGGATATCA 775
Query 810 TGCCTCCTAATGGAGTGAGAGTTGCTATGGAAATGCAAGCTGAAGCTGAACGTAAAAAGA 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGCCTCCTAATGGAGTGAGAGTTGCTATGGAAATGCAAGCTGAAGCTGAACGTAAAAAGA 835
Query 870 GAGCCCAGATTCTTGAGTCTGAAGGAGAACGTCAAGCCCATATCAATAGAGCTGATGGTA 929
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 GAGCCCAGATTCTTGAGTCTGAAGGAGAACGCCAAGCCCATATCAATAGAGCTGATGGTA 895
Query 930 AGAAAAGTTCTGTAATCTTGGAATCAGAAGCTGCAATGATGGACCAAGTCAATCGTGCAC 989
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 896 AGAAAAGTTCTGTAATCTTGGAATCAGAAGCTGCAAAGATGGACCAAGTCAATCGTGCAC 955
Query 990 AAGGTGAGGCTGAAGCAATATTAGCTAGAGCACAAGCAACAGCCAAGGGACTGGCCATGG 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAGGTGAGGCTGAAGCAATATTAGCTAGAGCACAAGCAACAGCCAAGGGACTGGCCATGG 1015
Query 1050 TATCTCAATCCCTCAAGGAAGCTGGTGGAGAGGAGGCTGCGAGTTTGAGAGTTGCGGAGC 1109
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1016 TATCTCAATCCCTCAAGGAAGCTGGTGGAGCGGAGGCTGCAAGTTTGAGAGTTGCGGAGC 1075
Query 1110 AATACATTCAAGCTTTTGGCAAAATTGCTAAGGAGGGTACAACAATGCTGCTTCCGAGTA 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1076 AATACATTCAAGCTTTTGGCAAAATTGCTAAGGAGGGTACAACAATGCTGCTTCCAAGTT 1135
Query 1170 ATGTCGACAATCCTGCTAGCATGATCGCTCAAGCTTTAGGAATGTACAAAGGGTTGTCAA 1229
||| |||||||||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct 1136 CTGTTGACAATCCTGCTGGCATGATCGCTCAAGCTTTAACAATGTACAAAGGCTTGTCAA 1195
Query 1230 CAAAGGTCCCAACAGTGGTTTCAGGGAAACTTCTGGAGTAGAATCCTCTACTAACGTGGT 1289
||||||||||||||||| ||||| |||||||| ||||||||||||||||| || ||||
Sbjct 1196 CAAAGGTCCCAACAGTGCTTTCACAGAAACTTCAGGAGTAGAATCCTCTACCGACATGGT 1255
Query 1290 TGT 1292
|||
Sbjct 1256 TGT 1258
> Ahg945292 jgi|Araly1|945292|scaffold_701521.1
Length=1276
Score = 972 bits (526), Expect = 0.0
Identities = 761/874 (87%), Gaps = 17/874 (2%)
Strand=Plus/Plus
Query 374 TGGGGAATCCGAATCGTGCCGGAGAGGAAAGC-TTGTGTGATTGAGCGGTTTGGTAAATT 432
||||||||||| || || ||||||||||| || || |||||||||||| || |||||| |
Sbjct 201 TGGGGAATCCGGATAGTTCCGGAGAGGAAGGCGTT-TGTGATTGAGCGATTCGGTAAA-T 258
Query 433 CCAC-ACGACTTTGCCGGCGGGGATTCACTTCCTTGTTCCGTTTGTGGATCGTATCGCTT 491
| | | ||| |||||| |||||||||| ||||| ||||||| ||||||||||| ||||
Sbjct 259 ACGCTAAGACGTTGCCGTCGGGGATTCATTTCCTCATTCCGTTCGTGGATCGTATTGCTT 318
Query 492 ATGTTCATTCTCTAAAGGAAGAAGCGATTCCTATT-GGTAATCAGACTGCGATTA-CAAA 549
||||||||||||| ||||||||||| || || ||| | |||||||||||||||| ||||
Sbjct 319 ATGTTCATTCTCTCAAGGAAGAAGCAATCCCGATTCCG-AATCAGACTGCGATTACCAAA 377
Query 550 GGATAACGTTAGCATCCACATCGATGGTGTTCTCTACGTTAAGATTGTGGATCCTAAGTT 609
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 378 -GACAACGTTAGTATCCACATCGATGGTGTTCTCTACGTTAAGATTGTGGATCCTATGTT 436
Query 610 GGCTTCTTATGGCGTTGAGAATCCGATCTATGCTGTTATGCAGTTGGCTCAGACTACAAT 669
|||||||| |||||||||| ||| |||||||||||| | ||| |||||||||| |||||
Sbjct 437 AGCTTCTTACGGCGTTGAGAGTCCTATCTATGCTGTTGTACAGCTGGCTCAGACCACAAT 496
Query 670 GCGTAGTGAGCTCGGTAAAATTACTCTTGACAAGACTTTTGAGGAACGGGACACTCTCAA 729
|||||||||||| ||||| || || ||||| ||||| ||||||||||| |||||||||||
Sbjct 497 GCGTAGTGAGCTTGGTAAGATCACGCTTGATAAGACCTTTGAGGAACGAGACACTCTCAA 556
Query 730 TGAGAAGATTGTGGAAGCCATCAATGTTGCTGCAAAAGATTGGGGTCTTCAGTGCCTTCG 789
|||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 557 CGAGAAGATAGTGGAAGCCATCAATGTTGCTGCTAGAGACTGGGGTCTTCAGTGCCTTCG 616
Query 790 TTATGAGATCAGGGATATCATGCCTCCTAATGGAGTGAGAGTTGCTATGGAAATGCAAGC 849
||||||||| |||||||| ||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 617 TTATGAGATAAGGGATATTATGCCCCCTCATGGAGTGAGAGCTGCTATGGAAATGCAAGC 676
Query 850 TGAAGCTGAACGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAGGAGAACGTCAAGCCCA 909
||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 677 TGAAGCTGAGCGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAGGAGAAAGGCAATCCCA 736
Query 910 TATCAATAGAGCTGATGGTAAGAAAAGTTCTGTAATCTTGGAATCAGAAGCTGCAATGAT 969
|||||| | ||||||||||||||||||||||||||||||| ||| ||||| |||| |||
Sbjct 737 TATCAACATTGCTGATGGTAAGAAAAGTTCTGTAATCTTGGCATCTGAAGCAGCAAAGAT 796
Query 970 GGACCAAGTCAATCGTGCACAAGGTGAGGCTGAAGCAATATTAGCTAGAGCACAAGCAAC 1029
|||||| || ||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 797 GGACCAGGTGAATCGAGCACAAGGTGAGGCAGAAGCAATACTAGCTAGAGCACAAGCAAC 856
Query 1030 AGCCA-AGGGACTGGCCATGGTATCTCAATCCCTCAAGGAAGCTGGTGGAG-AGGAGGCT 1087
|| | ||| |||| | || ||||||| |||||||||||| |||| |||| || ||||
Sbjct 857 TGCGAGAGGC-CTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGGAGTAG-AGGCG 914
Query 1088 GCGAGTTTGAGAGTTGCGGAGCAATACATT-CAAGCTTTTGGCAAAATTGCTAAGGAGGG 1146
||||||||||||||||| |||||||||||| || || || || || ||||| || |||||
Sbjct 915 GCGAGTTTGAGAGTTGCAGAGCAATACATTACA-GCCTTCGGTAACATTGCCAAAGAGGG 973
Query 1147 TACAACAATGCTGCTTCCGAGTAATGTCGACAA-TCCTGCTAGCATGATCGCTCAAGCTT 1205
|| |||||| ||||||| |||| || | ||| ||||||||||||||| ||||||||||
Sbjct 974 CACGACAATGTTGCTTCCAAGTACTG-CTTCAAATCCTGCTAGCATGATTGCTCAAGCTT 1032
Query 1206 TAGGAATGTACAAAGGG-TTGTCAACAAAGGTCC 1238
|| |||||||||| | |||||| ||| |||||
Sbjct 1033 TAACAATGTACAAAAGCCTTGTCATCAATGGTCC 1066
> Ahg950104 jgi|Araly1|950104|scaffold_801991.1
Length=582
Score = 451 bits (244), Expect = 6e-126
Identities = 341/385 (89%), Gaps = 18/385 (5%)
Strand=Plus/Plus
Query 209 ACCAGCTACCAAATCAATAAACCTTCGCCGTCAAAATCCTTCACTTCCAGGCT-TCTCCA 267
||||| ||||||||||| ||||| ||||||||||||||||| | ||| || | ||||||
Sbjct 109 ACCAGTTACCAAATCAACAAACCGACGCCGTCAAAATCCTTCGCCTCC-GGATATCTCCA 167
Query 268 CCAATCCTCCTCCGCCGGTACTCCTCCGCAACAACTTTTCGGCGCCCGTAGCTTCTCATC 327
||||| || || || | | |||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 168 CCAAT-CT--TCAGCTGCTTCTCCTCTGCAACAACTTTCCGGCGTCCGTAACTTCTCATC 224
Query 328 TCCCAGCAGTGATTTCAACAGCTACCACATTAATCCGCCGTCTAACTGGGGAATCCGAAT 387
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 225 TCCCAGCAGTGATTTCAACAGCTACAACATTAATCCGCCGTCTAACTGGGGAATCCGAAT 284
Query 388 CGTGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCACACGACTTTGCC 447
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 285 CGTGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCGCAAGACTTTGCC 344
Query 448 GGCGGGGATTCACTTCCTTGTTCCGTTTGTGGATCGTATCGCTTATGTTCATTCTCTAAA 507
||||||||||||||| | ||||||| |||||||| |||| ||||||||
Sbjct 345 GGCGGGGATTCACTTTCATGTTCCGCTTGTGGATTGTATTGCTTATGT------------ 392
Query 508 GGAAGAAGCGATTCCTATTGGTAATCAGACTGCGATTACAAAGGATAACGTTAGCATCCA 567
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 393 G-AAGAAGCGATTCCTATTGGTAATCAGACTGCGACCACAAAGGATAACGTTAGCATCTA 451
Query 568 CATCGATGGTGTTCTCTACGTTAAG 592
|||||||||||||||||||||||||
Sbjct 452 CATCGATGGTGTTCTCTACGTTAAG 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5