BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54130.2
Length=1936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495493 jgi|Araly1|495493|fgenesh2_kg.8__1309__AT5G54130.2 2540 0.0
> Ahg495493 jgi|Araly1|495493|fgenesh2_kg.8__1309__AT5G54130.2
Length=1754
Score = 2540 bits (1375), Expect = 0.0
Identities = 1610/1716 (94%), Gaps = 45/1716 (3%)
Strand=Plus/Plus
Query 118 TTAGTTTCTAATTTTGGG-TTAA-AAGAAATTCGGGTTTCAATTAATTCGAAAGAGCGGT 175
|||||||||||||||||| |||| ||| ||||| || ||||||||||||||||
Sbjct 78 TTAGTTTCTAATTTTGGGTTTAATTTTTGTTTC-GGTTT-AAAGAATTCGAAAGAGCGGT 135
Query 176 CACGACGTTTCTTAGAGAATCGTCTTCTTCATCTTCTTCGTGAACtttttgttttctcct 235
||||||||||| |||||||||||| ||||| ||||||||| | ||||||| ||||||
Sbjct 136 CACGACGTTTCATAGAGAATCGTCATCTTCTTCTTCTTCG-G----TTTTGTTCTCTCCT 190
Query 236 ttttttgattttcaccgccggagatttttgtatttttCCGATTATTCGCCGGCGGTTTAG 295
||||||||||||||||||| | || | | |||| |||||||||||||||||||
Sbjct 191 TTTTTTGATTTTCACCGCC-G-GA-----G-A-TTTT----TTATTCGCCGGCGGTTTAG 237
Query 296 AGATAATGAAGGGGAGGATATCAAAAATAGGAAGCTATGCAATCTCGTCTTCCATTAGAG 355
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 AGATAATGAAGGGGAGGATATCAAAAATAGGAAGCTATGCAATCTCATCTTCCATTAGAG 297
Query 356 ATCAGCAT---CAGCAACCTTGTATTTCTTGTACTACTTTCAATATCCTTGCTCCGATCT 412
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATCAACATCAGCAGCAACCTTGTATTTCTTGTACTACTTTCAATATCCTTGCTCCGATCT 357
Query 413 ATAAACGTCTCTCTCACAAGGATCAAAGTCTTCGTGAAAGTGATAATCGAGCGTATTGGC 472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 ATAAACGTCTCTCTCACAAGGATCAAAGTCTTCGTGAAAGCGATAATCGAGCGTATTGGC 417
Query 473 TTGGAAGGAATCATCGAATCATTGATTGGTTATTGTATGAGAGATCTTCAATCATATGTT 532
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTGGAAGGAATCATAGAATCCTTGATTGGTTATTGTATGAGAGATCTTCAATCATATGTT 477
Query 533 TACAGGAGTTTTGGGTAGGCAATGAAGAGCTTGTTAATTTGTACGAGAAGAGACTTGGAG 592
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 478 TACAGGAGTTTTGGGTAGGCAATGAAGAGCTTGTTAATTTATATGAGAAGAGACTTGGTG 537
Query 593 ACGCTGGTTATCTAAGTTACAAGCTTGGTCGTACTAATAATCGTGGTGATGGTTTGCTTA 652
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 ACGCTGGTTATTTAAGTTACAAGCTTGGTCGTACTAATAATCGTGGTGATGGTCTGCTTA 597
Query 653 CGGCTGTTCATAAGGACTATTTTAGAGTTGTGAACTCGAGGGATTTGCTTTTTAATGATT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 598 CGGCTGTTCATAAGGACTATTTTAGAGTTGTGAACTCGAGGGATTTGCTTTTTAACGATT 657
Query 713 GTGGTGATCGAGTTGCTCAGTTGCTACATGTAGAATTAGTTCCTCCTTACTCTCAGTATG 772
||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 GTGGTGATCGAGTCGCGCAGTTGCTACATGTAGAATTAGTTCCTCCTTACTCTCAGTTTG 717
Query 773 ATGCTCATCAAGAAGTTTTGATTGTGAATACTCATTTGTTGTTTCCTCATGATTCAACAT 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATGCTCATCAAGAAGTTTTGATTGTGAATACTCATTTGTTGTTTCCTCATGATTCAACAC 777
Query 833 TGTCCATAGTAAGATTGCAGCAGGTATATAAGATTCTTCAGTATGTAGAATCTTACCAGA 892
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 778 TGTCTATAGTAAGATTGCAGCAGGTGTATAAGATTCTTCAGTATGTAGAATCTTATCAGA 837
Query 893 AGGAAGTTAATCTCAGTCCCATGCCTATTATTCTTTGCGGAGATTGGAACGGAAGTAAGC 952
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGGAAGTTAATCTAAGTCCTATGCCTATTATTCTTTGCGGAGATTGGAACGGAAGTAAGC 897
Query 953 GAGGACATGTCTACAAGTTTCTCAGGTCACAGGGTTTTGTGTCGTCTTACGATACTGCTC 1012
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 898 GAGGGCATGTCTACAAGTTTCTCAGGTCACAGGGTTTTGTGTCATCTTACGACACTGCTC 957
Query 1013 ATCGGTACACAGACTCAGATGCTCACAAGTGGGTAAGCCACCGGAATCATCGGGGTAACA 1072
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATCGGTACACAGATTCAGATGCTCACAAGTGGGTAAGCCACCGGAATCATCGGGGTAACA 1017
Query 1073 TATGCGCTGTCGATTTCATATGGCTTTTAAATCCAAATCGGTATAGAAAGCTGCTAAAAA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TATGCGCTGTCGATTTCATATGGCTTTTAAATCCAAATCGGTATAGAAAGCTGCTAAAAA 1077
Query 1133 CAAGTTGGAGCGAGGCAGTCTTTGGCATGTTCAGGTATCTACTGAGAAGAGCTTCACTAA 1192
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1078 CAAGTTGGAGCGAGGCAGTGTTTGGCATGTTCAGGTATCTACTAAGAAGAGCTTCACTAA 1137
Query 1193 CAGCTGAAGATGCTTTTGCTTTTCTAAAAACTGACAATGATGGTGACCACATTACATTCA 1252
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1138 CAGCTGAAGATGCTTTTGCTTTTCTGAAAACTGACAATGATGGTGACTACATTACATTCA 1197
Query 1253 TGGGCTTCTGTGAGACTCTTCGGCAGCTCAATCTAACAGGTCACTGTAATGGACTCACGA 1312
||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 1198 TGGGCTTCTGTGAGACTCTTCGGCAGCTCAATCTAACAGGTCATTGCAATGGACTAACAA 1257
Query 1313 CAAAAGAGATCAAAGATTTGTGGACTCAAGCTGACATTGATGGAAACGGTCTTCTAGATT 1372
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1258 CAAAAGAGATCAAAGATTTGTGGATTCAAGCAGACATTGATGGAAACGGTCTTCTAGATT 1317
Query 1373 ATAAGGAGTTTCAGCAAAGAATATGGAACCAAACCTGGTCAGAACAAAGAGATGCAGAGG 1432
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ACAAGGAGTTTCAGCAAAGAATATGGAACCAAACCTGGTCAGAACAAAGAGATGCAGAGG 1377
Query 1433 ACGGAGAAGCAAAAGGTAACCAAGAACAAACCGTTGGATTCAGTGTCAAAAACGCAGTTT 1492
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1378 ACGGAGAAGCAAAAGGTAACCAAGAACAAACCGTTGGATTCAGTGTCAAGAACGCGGTTC 1437
Query 1493 TGTTTCCTCCTGAAGTTGAAAAAGGAATGTGGCCAGAAAATTACTCTCTATCAGATCACG 1552
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGTTTCCTCCCGAAGTTGAAAAAGGAATGTGGCCAGAAAATTACTCTCTATCAGATCACG 1497
Query 1553 CGAGACTCACTGTTGTATTCTCACCCATAAGAATGCCTTGCTCTCAATTGGTTTCATGAC 1612
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CGAGACTCACCGTTGTATTCTCACCCATAAGAATGCCTTGCTCTCAATTGGTTTCATGAC 1557
Query 1613 AAAACACACTCACCAAACAAACTTTAGCTTCTTCCATTTTTAAGAGACCTCTGAGTTTTG 1672
|||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1558 AAAA-ACACTGACCAAACAAACTTTAGCTTCTTCCATTTA-AAGAGACCTCTGAGTTTTG 1615
Query 1673 GTGTCCCCTTACAGAGAAACTTCGCTCTGTCTCTCCATTGGATCGGCTTGACCGCTCTCA 1732
|||||||||||||||||| | | | ||||||||||||||| | |||||
Sbjct 1616 GTGTCCCCTTACAGAGAA--T-C-C-----------ATTGGATCGGCTTGAATGATCTCA 1660
Query 1733 CGTTGCGGTTCCTGCGTTGGGTGGGAAGAAGAGAGAAAGGGGGACAT-AGGTCTATAAAT 1791
| |||||||| |||||||||| ||||||||||||||||| || || | ||||||||||||
Sbjct 1661 CTTTGCGGTTACTGCGTTGGGGGGGAAGAAGAGAGAAAGAGG-AC-TGAGGTCTATAAAT 1718
Query 1792 TTTTACTGTGTACAAAAACATGTAAACTAAATATAT 1827
||||||||||||||||||||||||||||||||||||
Sbjct 1719 TTTTACTGTGTACAAAAACATGTAAACTAAATATAT 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72752367950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5