BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54140.1 Length=1514 Score E Sequences producing significant alignments: (Bits) Value Ahg495494 jgi|Araly1|495494|fgenesh2_kg.8__1310__AT5G54140.1 2041 0.0 Ahg948060 jgi|Araly1|948060|scaffold_704289.1 278 1e-73 > Ahg495494 jgi|Araly1|495494|fgenesh2_kg.8__1310__AT5G54140.1 Length=1393 Score = 2041 bits (1105), Expect = 0.0 Identities = 1271/1349 (94%), Gaps = 19/1349 (1%) Strand=Plus/Plus Query 1 ATGGCTAATTCCTCAATCGT-AGCTCTTCTTCTTC---TCTTTGTTATCGCTAGTTCCGT 56 |||||||||||||||||| | |||||||||||||| || |||| |||||||||||||| Sbjct 1 ATGGCTAATTCCTCAATC-TCAGCTCTTCTTCTTCTTATCCTTGTAATCGCTAGTTCCGT 59 Query 57 CAATGGAGGAGATCAAGAGTATCCAAATCAATAT-CTAACAGAAGCTTTAGGTGATAAAG 115 |||||||||||||||||||||| | |||||| | |||||||||||||| |||||||||| Sbjct 60 CAATGGAGGAGATCAAGAGTATTCGCATCAAT-TGCTAACAGAAGCTTTGGGTGATAAAG 118 Query 116 AATGGTTAGTGTCTGTAAGAAGACAAATCCATGAAAACCCAGAACTCCTTTTCGAGTTAC 175 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 AATGGTTAGTCTCTATAAGAAGACAAATCCATGAAAACCCAGAACTCCTTTTCGAGTTAC 178 Query 176 ATAAAACAAGTGCTCTGATTCGTCGCGAGCTTGATGAATTAGGGGTTTCTTATTCTTACC 235 | ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 179 ACAAAACCAGTGCTCTGATTCGTCGCGAGCTTGATTAATTAGGGGTTTCTTACTCTTACC 238 Query 236 CGGTTGCGAAAACCGGGATCGTAGCTCAAATCGGATCCGGTTATCCTCCGGTTGTTGCTC 295 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 239 CGGTTGCTAAAACCGGGATTGTAGCTCAAATCGGATCCGGTTATCCTCCGGTTGTTGCTC 298 Query 296 TCCGTGCTGATATGGATGCTCTTCCCTTACAAGAACTTGTTGAGTGGGATCATAAGAGCA 355 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 299 TCCGTGCTGATATGGATGCTCTTCCCTTGCAAGAACTTGTTGAGTGGGATCATAAGAGCA 358 Query 356 AAATCGATGGAAAAATGCATGCTTGTGGTCATGATTCTCATACCACTATGCTCCTTGGTG 415 ||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct 359 AAATCGACGGAAAAATGCATGCTTGTGGTCATGATTCACACACCACCATGCTCCTTGGTG 418 Query 416 CTGCTAAATTGCTTAGCAAACGCAAACGTATGCT-CAATGGAACAGTGAGGCTTCTTTTT 474 |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| Sbjct 419 CTGCTAAATTGCTTAGCAAACGTAAACGTATG-TACAATGGAACAGTGAGGCTTCTTTTT 477 Query 475 CAACCAGCAGAAGAAGGTGGTGCAGGTGCTTTTCATATGATAAAAGAAGGTGCTTTGGGT 534 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 478 CAACCAGCAGAAGAAGGTGGTGCAGGTGCTTTTCACATGATAAAAGAAGGTGCTTTGGGT 537 Query 535 GATTCTGAAGCAATATTTGGGATGCATGTTCATACTGGCTTACCTACAGGAGAATTAGCA 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GATTCTGAAGCAATATTTGGGATGCATGTTCATACTGGCTTACCTACAGGAGAATTAGCA 597 Query 595 ACAATCTCGGGTCCTGCTTTGGCATCCACAAGCATTTTCAGTGTAAGAATGAGTGGTAA- 653 || ||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 598 ACTATCCCGGGTCCTGCTATGGCATCCACAAGCATTTTCAGTGTAAGAATAAGTGG-AAT 656 Query 654 ATCACCCGCTTCTTCGGAGACCTATTCTTGTGTTGATCCGGTGTTGGCTGCATCATCTAC 713 || ||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||||| Sbjct 657 ATTACCGGCTTCTTCGGAGACATATGCTTGTGTTGATCCAGTGTTGGCTGCATCATCTAC 716 Query 714 CATCTTAGCATTGCAACTTATTA-TCTCCAGAGAAGTAGATCCTCTCTTAAGCCATGTGC 772 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 717 CATCTTAGCATTGCAACTTA-TAGTCTCCAGAGAAGTAGATCCTCTCTTAAGCCATGTGC 775 Query 773 TCTCTGTTACATTTATGAAAAGTGGCGGTTCTGAGTTTGATGTGATTCCGGCATATGTAG 832 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 TGTCTGTTACATTTATGAAAAGTGGCGGTTCTGAGTTTGATGTGATTCCGGCATATGTAG 835 Query 833 AATTTGGGGGAACTTTGAGGAGTCTTACAACCAATGGCATCAACTGGTTGATAAAGCGGT 892 ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| Sbjct 836 AATTTGGGGGAACTTTGAGGAGTCTTACAACTGATGGCATGAACTTGTTGATAAAGCGGT 895 Query 893 TGAAAGAGGTGGTTGAAGGACAAGCTGAAGTACAAAGATGCAAAGCGGATATAGATATGC 952 |||||||||||||||||||| |||||||||| || |||||||||| |||||||||||||| Sbjct 896 TGAAAGAGGTGGTTGAAGGAGAAGCTGAAGTTCATAGATGCAAAGTGGATATAGATATGC 955 Query 953 ATGAAGACGATCATCCTATGTATCCAGCAACAGTGAACGATCACAAGCTACACGAATTCA 1012 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 956 ATGAAGACGATCATCCTATGTATCCAGCAACAGTGAACGATCACAAGCTACACGAATACG 1015 Query 1013 CTGAAAAGGTTTTGAAACTCTTGCTTGGACCCGAGAAGGTGAAACCGGCTAACAAGGTAA 1072 ||||||| ||||||||||||||||||||||||||||| |||||||||| | |||||||| Sbjct 1016 CTGAAAAAGTTTTGAAACTCTTGCTTGGACCCGAGAAAGTGAAACCGGGTGGCAAGGTAA 1075 Query 1073 TGGCGGGTGAGGATTTTGCTTTCTATCAACAAAAAATACCCGGTTACTA-CATAGGAATC 1131 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct 1076 TGGCGGGTGAGGATTTTGCTTTCTATCAACAAAAAATACCCGGTTACTATC-TAGGGATC 1134 Query 1132 GGTATAAGAAACGAAGAAATCGGTTCTGTGCGTT-CGGTTCATTCGCCTTATTTCTTCCT 1190 ||||| |||||| |||||||||||||||||| | || |||||||||||||||||||||| Sbjct 1135 GGTATCAGAAACAAAGAAATCGGTTCTGTGCATAGCG-TTCATTCGCCTTATTTCTTCCT 1193 Query 1191 CGACGAGAATGTGCTTCCCATTGGATCAGCAACGTTTGCTGCCTTAGCTGAAATGTATCT 1250 |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 1194 CGACGAGAATGTTCTTCCCATTGGATCAGCATCGTTTGCTGCCTTAGCTGAGATGTATCT 1253 Query 1251 ACAAGAGCATCAGAATCAAACTAAGTCTGGAGATTGAGAAAGTTACTAAACAAAAG-CTT 1309 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| Sbjct 1254 ACAAGAGCATCAGAATCAAACTAAGTCTGGAGATTGAGAAAGT-ACTAAAGAAATCTCTT 1312 Query 1310 AGTTAATTGCCTTCACAAGTAAATGCTAT 1338 ||||| ||||||||| ||||||||||||| Sbjct 1313 AGTTAGTTGCCTTCATAAGTAAATGCTAT 1341 > Ahg948060 jgi|Araly1|948060|scaffold_704289.1 Length=328 Score = 278 bits (150), Expect = 1e-73 Identities = 187/205 (91%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 906 TGAAGGACAAGCTGAAGTACAAAGATGCAAAGCGGATATAGATATGCATGAAGACGATCA 965 ||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||| Sbjct 107 TGAAGGACAAGCTGATGTACATAGATGCAAAATGGATATAGATGTGCATGAAGACGATCA 166 Query 966 TCCTATGTATCCAGCAACAGTGAACGATCACAAGCTACACGAATTCACTGAAAAGGTTTT 1025 ||||||||||||||||||| ||||||||| |||||||||||||| | ||||||| ||||| Sbjct 167 TCCTATGTATCCAGCAACACTGAACGATCCCAAGCTACACGAATACGCTGAAAATGTTTT 226 Query 1026 GAAACTCTTGCTTGGACCCGAGAAGGTGAAACCG-GCTAACAAGGTAATGGCGGGTGAGG 1084 ||||||||||||||||||||||| || |||||| | | |||||||||||||||||||| Sbjct 227 AAAACTCTTGCTTGGACCCGAGAAAGTAAAACCGTG-TGGCAAGGTAATGGCGGGTGAGG 285 Query 1085 ATTTTGCTTTCTATCAACAAAAAAT 1109 |||||||||||||||||||| |||| Sbjct 286 ATTTTGCTTTCTATCAACAATAAAT 310 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56678284560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5