BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54140.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495494 jgi|Araly1|495494|fgenesh2_kg.8__1310__AT5G54140.1 2041 0.0
Ahg948060 jgi|Araly1|948060|scaffold_704289.1 278 1e-73
> Ahg495494 jgi|Araly1|495494|fgenesh2_kg.8__1310__AT5G54140.1
Length=1393
Score = 2041 bits (1105), Expect = 0.0
Identities = 1271/1349 (94%), Gaps = 19/1349 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATTCCTCAATCGT-AGCTCTTCTTCTTC---TCTTTGTTATCGCTAGTTCCGT 56
|||||||||||||||||| | |||||||||||||| || |||| ||||||||||||||
Sbjct 1 ATGGCTAATTCCTCAATC-TCAGCTCTTCTTCTTCTTATCCTTGTAATCGCTAGTTCCGT 59
Query 57 CAATGGAGGAGATCAAGAGTATCCAAATCAATAT-CTAACAGAAGCTTTAGGTGATAAAG 115
|||||||||||||||||||||| | |||||| | |||||||||||||| ||||||||||
Sbjct 60 CAATGGAGGAGATCAAGAGTATTCGCATCAAT-TGCTAACAGAAGCTTTGGGTGATAAAG 118
Query 116 AATGGTTAGTGTCTGTAAGAAGACAAATCCATGAAAACCCAGAACTCCTTTTCGAGTTAC 175
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AATGGTTAGTCTCTATAAGAAGACAAATCCATGAAAACCCAGAACTCCTTTTCGAGTTAC 178
Query 176 ATAAAACAAGTGCTCTGATTCGTCGCGAGCTTGATGAATTAGGGGTTTCTTATTCTTACC 235
| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 179 ACAAAACCAGTGCTCTGATTCGTCGCGAGCTTGATTAATTAGGGGTTTCTTACTCTTACC 238
Query 236 CGGTTGCGAAAACCGGGATCGTAGCTCAAATCGGATCCGGTTATCCTCCGGTTGTTGCTC 295
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CGGTTGCTAAAACCGGGATTGTAGCTCAAATCGGATCCGGTTATCCTCCGGTTGTTGCTC 298
Query 296 TCCGTGCTGATATGGATGCTCTTCCCTTACAAGAACTTGTTGAGTGGGATCATAAGAGCA 355
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 TCCGTGCTGATATGGATGCTCTTCCCTTGCAAGAACTTGTTGAGTGGGATCATAAGAGCA 358
Query 356 AAATCGATGGAAAAATGCATGCTTGTGGTCATGATTCTCATACCACTATGCTCCTTGGTG 415
||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 359 AAATCGACGGAAAAATGCATGCTTGTGGTCATGATTCACACACCACCATGCTCCTTGGTG 418
Query 416 CTGCTAAATTGCTTAGCAAACGCAAACGTATGCT-CAATGGAACAGTGAGGCTTCTTTTT 474
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 419 CTGCTAAATTGCTTAGCAAACGTAAACGTATG-TACAATGGAACAGTGAGGCTTCTTTTT 477
Query 475 CAACCAGCAGAAGAAGGTGGTGCAGGTGCTTTTCATATGATAAAAGAAGGTGCTTTGGGT 534
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 CAACCAGCAGAAGAAGGTGGTGCAGGTGCTTTTCACATGATAAAAGAAGGTGCTTTGGGT 537
Query 535 GATTCTGAAGCAATATTTGGGATGCATGTTCATACTGGCTTACCTACAGGAGAATTAGCA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GATTCTGAAGCAATATTTGGGATGCATGTTCATACTGGCTTACCTACAGGAGAATTAGCA 597
Query 595 ACAATCTCGGGTCCTGCTTTGGCATCCACAAGCATTTTCAGTGTAAGAATGAGTGGTAA- 653
|| ||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 598 ACTATCCCGGGTCCTGCTATGGCATCCACAAGCATTTTCAGTGTAAGAATAAGTGG-AAT 656
Query 654 ATCACCCGCTTCTTCGGAGACCTATTCTTGTGTTGATCCGGTGTTGGCTGCATCATCTAC 713
|| ||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 657 ATTACCGGCTTCTTCGGAGACATATGCTTGTGTTGATCCAGTGTTGGCTGCATCATCTAC 716
Query 714 CATCTTAGCATTGCAACTTATTA-TCTCCAGAGAAGTAGATCCTCTCTTAAGCCATGTGC 772
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 717 CATCTTAGCATTGCAACTTA-TAGTCTCCAGAGAAGTAGATCCTCTCTTAAGCCATGTGC 775
Query 773 TCTCTGTTACATTTATGAAAAGTGGCGGTTCTGAGTTTGATGTGATTCCGGCATATGTAG 832
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGTCTGTTACATTTATGAAAAGTGGCGGTTCTGAGTTTGATGTGATTCCGGCATATGTAG 835
Query 833 AATTTGGGGGAACTTTGAGGAGTCTTACAACCAATGGCATCAACTGGTTGATAAAGCGGT 892
||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 836 AATTTGGGGGAACTTTGAGGAGTCTTACAACTGATGGCATGAACTTGTTGATAAAGCGGT 895
Query 893 TGAAAGAGGTGGTTGAAGGACAAGCTGAAGTACAAAGATGCAAAGCGGATATAGATATGC 952
|||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||
Sbjct 896 TGAAAGAGGTGGTTGAAGGAGAAGCTGAAGTTCATAGATGCAAAGTGGATATAGATATGC 955
Query 953 ATGAAGACGATCATCCTATGTATCCAGCAACAGTGAACGATCACAAGCTACACGAATTCA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 956 ATGAAGACGATCATCCTATGTATCCAGCAACAGTGAACGATCACAAGCTACACGAATACG 1015
Query 1013 CTGAAAAGGTTTTGAAACTCTTGCTTGGACCCGAGAAGGTGAAACCGGCTAACAAGGTAA 1072
||||||| ||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct 1016 CTGAAAAAGTTTTGAAACTCTTGCTTGGACCCGAGAAAGTGAAACCGGGTGGCAAGGTAA 1075
Query 1073 TGGCGGGTGAGGATTTTGCTTTCTATCAACAAAAAATACCCGGTTACTA-CATAGGAATC 1131
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 1076 TGGCGGGTGAGGATTTTGCTTTCTATCAACAAAAAATACCCGGTTACTATC-TAGGGATC 1134
Query 1132 GGTATAAGAAACGAAGAAATCGGTTCTGTGCGTT-CGGTTCATTCGCCTTATTTCTTCCT 1190
||||| |||||| |||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 1135 GGTATCAGAAACAAAGAAATCGGTTCTGTGCATAGCG-TTCATTCGCCTTATTTCTTCCT 1193
Query 1191 CGACGAGAATGTGCTTCCCATTGGATCAGCAACGTTTGCTGCCTTAGCTGAAATGTATCT 1250
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1194 CGACGAGAATGTTCTTCCCATTGGATCAGCATCGTTTGCTGCCTTAGCTGAGATGTATCT 1253
Query 1251 ACAAGAGCATCAGAATCAAACTAAGTCTGGAGATTGAGAAAGTTACTAAACAAAAG-CTT 1309
||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1254 ACAAGAGCATCAGAATCAAACTAAGTCTGGAGATTGAGAAAGT-ACTAAAGAAATCTCTT 1312
Query 1310 AGTTAATTGCCTTCACAAGTAAATGCTAT 1338
||||| ||||||||| |||||||||||||
Sbjct 1313 AGTTAGTTGCCTTCATAAGTAAATGCTAT 1341
> Ahg948060 jgi|Araly1|948060|scaffold_704289.1
Length=328
Score = 278 bits (150), Expect = 1e-73
Identities = 187/205 (91%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 906 TGAAGGACAAGCTGAAGTACAAAGATGCAAAGCGGATATAGATATGCATGAAGACGATCA 965
||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 107 TGAAGGACAAGCTGATGTACATAGATGCAAAATGGATATAGATGTGCATGAAGACGATCA 166
Query 966 TCCTATGTATCCAGCAACAGTGAACGATCACAAGCTACACGAATTCACTGAAAAGGTTTT 1025
||||||||||||||||||| ||||||||| |||||||||||||| | ||||||| |||||
Sbjct 167 TCCTATGTATCCAGCAACACTGAACGATCCCAAGCTACACGAATACGCTGAAAATGTTTT 226
Query 1026 GAAACTCTTGCTTGGACCCGAGAAGGTGAAACCG-GCTAACAAGGTAATGGCGGGTGAGG 1084
||||||||||||||||||||||| || |||||| | | ||||||||||||||||||||
Sbjct 227 AAAACTCTTGCTTGGACCCGAGAAAGTAAAACCGTG-TGGCAAGGTAATGGCGGGTGAGG 285
Query 1085 ATTTTGCTTTCTATCAACAAAAAAT 1109
|||||||||||||||||||| ||||
Sbjct 286 ATTTTGCTTTCTATCAACAATAAAT 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5