BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54145.1

Length=619
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495495 jgi|Araly1|495495|fgenesh2_kg.8__1311__AT5G54145.1         429    1e-119


> Ahg495495 jgi|Araly1|495495|fgenesh2_kg.8__1311__AT5G54145.1
Length=565

 Score =  429 bits (232),  Expect = 1e-119
 Identities = 271/289 (94%), Gaps = 5/289 (2%)
 Strand=Plus/Plus

Query  2    CACTACTCAAATCTTCATCGCTTAGATCTTTCTTTAAAAACAAATCAGAAATTTTCTTAA  61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CACTACTCAAATCTTCATCGCTTAGATCTTTCTTTAAAAACAAATCAGAAATTTTCTTAA  60

Query  62   GAGTCAAGAAAATTTCAAGAACC-AATTCTATAATGATCTCAGTGGTGATTCTTACTGAG  120
            ||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||
Sbjct  61   GAGTCAAGAAAATTTCAAGAACCTAAT-CGATAATGATCTCAGTGGTGATTATTACTGAG  119

Query  121  CTACTAGTAGAGTACACGGCAGCTCTAGCTAAACTCACCGCCGGGATTCTTCCACGGCGT  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  120  CTACTAGTAGAGTACACGGCTGCTCTAGCTAAACTCACCGCCGGGATTCTTCCACGGCGA  179

Query  181  ACCGGAGATAGAAACGCCGTAAGGATCGGTGGTTTTCTCCTTCCTTCACCTTCTTCAACG  240
            |||||  |||||||| ||||| ||||||| ||||||||||||||| |||||||||| || 
Sbjct  180  ACCGGCTATAGAAACTCCGTACGGATCGGCGGTTTTCTCCTTCCTACACCTTCTTCGAC-  238

Query  241  ACGTCGATGATTCCTGATTTCTCTTCTCATCTAGTTGATTTCTGATTTG  289
            |  |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct  239  A--TCGATGATTCCTGATTTCTCTTCTCACCTCGTTGATTTCTGATTTG  285


 Score =  243 bits (131),  Expect = 2e-63
 Identities = 238/284 (84%), Gaps = 29/284 (10%)
 Strand=Plus/Plus

Query  347  TCTATGATCTAGTCGATGAGAAGCGACTGAGA-TTTTTACTGAGTGTCTCGTCGTCTTGA  405
            ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct  300  TCTATGATCTAATCGATGAGAAGCGACTGAGATTTTTTACCGAGTGTCTCGTCGTCTTAA  359

Query  406  ATCACGTTTTCTTGAATCGTATAGAGCTTTGTAGAATCTGTATCTAATTTTTATATATAG  465
            ||||||||||||||||||| ||||||||||||| ||| |||||||||   || |||||  
Sbjct  360  ATCACGTTTTCTTGAATCGCATAGAGCTTTGTAAAATATGTATCTAA---TT-TATAT--  413

Query  466  AGATGGTTGATAGTTTTGAAGAACTAATAAGTTTACT--AGATCtttttttGTTTCCATG  523
              |    | ||||    | | ||||||||||||||||  || | |||||||| | |||||
Sbjct  414  --A----T-ATAG---AG-A-AACTAATAAGTTTACTCGAGCTTTTTTTTTGCTGCCATG  461

Query  524  TGATTTGTGTTTTTATAGTACTTTAACA----T----TTGTTAAAGGCTATGATCTTGAT  575
            ||||||   |||||||||||||||||||    |    |||||||||||||||||||||||
Sbjct  462  TGATTTAAATTTTTATAGTACTTTAACATTGTTAACATTGTTAAAGGCTATGATCTTGAT  521

Query  576  CTGTAATTTCATAACTAGACCTCTATTTTGCTTTATGGTCAATG  619
            ||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct  522  CTGTAATTTCATAACTAGATCTCTATTTTGGTTTATGGTGAATG  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22645012698


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5