BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54148.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495496 jgi|Araly1|495496|fgenesh2_kg.8__1312__AT5G54150.1 276 3e-73
Ahg950042 jgi|Araly1|950042|scaffold_801929.1 163 2e-39
Ahg917090 jgi|Araly1|917090|Al_scaffold_0008_1841 124 1e-27
Ahg492019 jgi|Araly1|492019|fgenesh2_kg.7__1452__AT4G27660.1 95.3 8e-19
> Ahg495496 jgi|Araly1|495496|fgenesh2_kg.8__1312__AT5G54150.1
Length=546
Score = 276 bits (149), Expect = 3e-73
Identities = 162/168 (96%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 66 GaaaaaaaTGGAGAAAAAGGAAGAAGATGACACGCCACT-CGTAGGGATATTCTGTCTGA 124
||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||
Sbjct 219 GAAAAAAATGGAGAAAAAGGAAGAAGATGACACACCACTAAG-AGGCATATTCTGTCTGA 277
Query 125 AAACAAGACAAGACATGAAAAGGTTCGAAGAAACAGAGGATTGCTTTATCCTCGATTTCG 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 278 AAACAAGACAAGACATGAAAAGATTCGAAGAAACAGAGGATTGCTTTATCCTCGATTTCG 337
Query 185 ATCCTTTTGATTCGTTCGACGTTAAAAAACTCACCTTTACCGATGATG 232
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 ATCCTTTTGATTCGTTCGACGTTAAAAAACTCACCTTTACCGATGATG 385
Score = 174 bits (94), Expect = 1e-42
Identities = 106/112 (95%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 315 GTGTTACTGTTACGTGTGTGATAAGCCTGCTCCTTGTGCAGAGTGGACTATATCGACTTC 374
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 435 GTGTTACTGTTACGTGTGCGATAAGCCTGCTCCTTGTGCAGAGTGGATTATATCGACTTC 494
Query 375 ACATTGCAATGCGTATGACTCTGCTTTGTGGAATTTGTGTAGGACATAGTGA 426
|||||||||||| ||||||||| ||| ||||||||||||||||||| |||||
Sbjct 495 ACATTGCAATGCTTATGACTCTACTTCGTGGAATTTGTGTAGGACAAAGTGA 546
> Ahg950042 jgi|Araly1|950042|scaffold_801929.1
Length=300
Score = 163 bits (88), Expect = 2e-39
Identities = 100/106 (94%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 328 GTGTGTGATAAGCCTGCTCCTTGTGCAGAGTGGACTATATCGACTTCACATTGCAATGCG 387
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGTGCGATAAGCCTGCTCCTTGTGCAGAGTGGACTATATCGACTTCACATTGCAATGCT 240
Query 388 TATGACTCTGCTTTGTGGAATTTGTGTAGGACATAGTGAAATCTGG 433
||||||||| ||| ||||||||||||||||||| ||| ||||||||
Sbjct 241 TATGACTCTACTTCGTGGAATTTGTGTAGGACAAAGTAAAATCTGG 286
> Ahg917090 jgi|Araly1|917090|Al_scaffold_0008_1841
Length=180
Score = 124 bits (67), Expect = 1e-27
Identities = 73/76 (96%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 240 AGATTATCCACATCCAAGACATTTCTGTTTGAATTTTCCATTTGGATCAACTCCTAATTC 299
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 105 AGATTATCCACATCCAAGACATTTATGTTTGAATTTTCCATTTGGATCAACTCCTAATCC 164
Query 300 AAGCCACTGTGATTTG 315
|||||| |||||||||
Sbjct 165 AAGCCATTGTGATTTG 180
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 203 ACGTTAAAAAACTCACCTTTACCGATGATG 232
||||||||||||||||||||||||||||||
Sbjct 14 ACGTTAAAAAACTCACCTTTACCGATGATG 43
> Ahg492019 jgi|Araly1|492019|fgenesh2_kg.7__1452__AT4G27660.1
Length=721
Score = 95.3 bits (51), Expect = 8e-19
Identities = 95/115 (83%), Gaps = 7/115 (6%)
Strand=Plus/Plus
Query 77 AGAAAAAGGAAGAAGATGACACGCCACTCGTAG-GG-ATATTCTGTCTGAAAACAAGACA 134
|||| || ||||| |||| ||| | ||| ||| || ||||| ||||| |||| ||||||
Sbjct 163 AGAAGAA-GAAGACGATGGCAC-AC-CTCTTAGAGGTATATTTTGTCTTAAAAAAAGACA 219
Query 135 AGACATGAAAAGGTTCGAAGA-AACAGAGGATTGCTTTATCCTCGATTTCGATCC 188
||| ||||| | ||||| || || ||||||||||||||||||||||||||||||
Sbjct 220 AGATATGAAGATTTTCGAGGAGAA-AGAGGATTGCTTTATCCTCGATTTCGATCC 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5