BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54150.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495496 jgi|Araly1|495496|fgenesh2_kg.8__1312__AT5G54150.1         296    9e-80


> Ahg495496 jgi|Araly1|495496|fgenesh2_kg.8__1312__AT5G54150.1
Length=546

 Score =  296 bits (160),  Expect = 9e-80
 Identities = 200/219 (91%), Gaps = 3/219 (1%)
 Strand=Plus/Plus

Query  49   ATGGGGACGAAGGCGAGAACAACGAAACCATCATTGGAAGAAGAAGGGAGT---CCACTC  105
            |||| ||||||||||||||||| || | |||||||| ||||||||||||||   ||||||
Sbjct  1    ATGGAGACGAAGGCGAGAACAAAGACATCATCATTGAAAGAAGAAGGGAGTCCACCACTC  60

Query  106  AGAGGCATTTTATGTGTGAAAACCAGACGAGACATGAAGAGATTTGAAAAAACAGAGGAT  165
            ||||||||||| |||||||||||||||| ||||||||||||| | ||  |||||||||| 
Sbjct  61   AGAGGCATTTTCTGTGTGAAAACCAGACAAGACATGAAGAGAATCGAGGAAACAGAGGAC  120

Query  166  TGCTTCATCCTCGATTTCAATCCTTTTGATTCGTTTGACGTTAAAAGGCTCTCATTTTCC  225
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  121  TGCTTCATTCTCGATTTCAATCCTTTTGATTCGTTTGACGTTAAAAGGCTCTCATATTCC  180

Query  226  CTTGATAAAGATTTGGAAATCATCCATGAGTCAGGCCAG  264
            |||||||||||||||||||||||||||||| | ||||||
Sbjct  181  CTTGATAAAGATTTGGAAATCATCCATGAGACGGGCCAG  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5