BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54150.1 Length=483 Score E Sequences producing significant alignments: (Bits) Value Ahg495496 jgi|Araly1|495496|fgenesh2_kg.8__1312__AT5G54150.1 296 9e-80 > Ahg495496 jgi|Araly1|495496|fgenesh2_kg.8__1312__AT5G54150.1 Length=546 Score = 296 bits (160), Expect = 9e-80 Identities = 200/219 (91%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 49 ATGGGGACGAAGGCGAGAACAACGAAACCATCATTGGAAGAAGAAGGGAGT---CCACTC 105 |||| ||||||||||||||||| || | |||||||| |||||||||||||| |||||| Sbjct 1 ATGGAGACGAAGGCGAGAACAAAGACATCATCATTGAAAGAAGAAGGGAGTCCACCACTC 60 Query 106 AGAGGCATTTTATGTGTGAAAACCAGACGAGACATGAAGAGATTTGAAAAAACAGAGGAT 165 ||||||||||| |||||||||||||||| ||||||||||||| | || |||||||||| Sbjct 61 AGAGGCATTTTCTGTGTGAAAACCAGACAAGACATGAAGAGAATCGAGGAAACAGAGGAC 120 Query 166 TGCTTCATCCTCGATTTCAATCCTTTTGATTCGTTTGACGTTAAAAGGCTCTCATTTTCC 225 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 TGCTTCATTCTCGATTTCAATCCTTTTGATTCGTTTGACGTTAAAAGGCTCTCATATTCC 180 Query 226 CTTGATAAAGATTTGGAAATCATCCATGAGTCAGGCCAG 264 |||||||||||||||||||||||||||||| | |||||| Sbjct 181 CTTGATAAAGATTTGGAAATCATCCATGAGACGGGCCAG 219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17513415351 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5