BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54165.1
Length=396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950048 jgi|Araly1|950048|scaffold_801935.1 272 1e-72
> Ahg950048 jgi|Araly1|950048|scaffold_801935.1
Length=274
Score = 272 bits (147), Expect = 1e-72
Identities = 240/281 (85%), Gaps = 21/281 (7%)
Strand=Plus/Plus
Query 33 CAACAAAAAGAATTCGAGGATGATGTCTATTTTTAGCCCATTCGAAGCTCTTTACGCCGA 92
||||||| ||||||||||||||||||||||||||||||| || |||||||||||| | ||
Sbjct 2 CAACAAATAGAATTCGAGGATGATGTCTATTTTTAGCCCCTTTGAAGCTCTTTACACTGA 61
Query 93 ATCCAACGGCTTCAAGATGATATTCTCAGGCACCAAGAAGCAAAGCTCCGGTGATAATCA 152
||||||||||||||||||||||||||||||||||||||| || | || | |
Sbjct 62 ATCCAACGGCTTCAAGATGATATTCTCAGGCACCAAGAATCA--G-TC---T------C- 108
Query 153 GTCGCCGGCGACAGATCAGCAAAAGAACGCTGGAAAAACTCCGATTTCGTCAGACGATGA 212
|| | |||| || ||||||||||||| ||||||||||||| |||| || ||||| ||
Sbjct 109 --CG--G-CGACGGAGCAGCAAAAGAACGTTGGAAAAACTCCGGTTTCATCGGACGACGA 163
Query 213 AAAGAGTAATAAGAAGAAGA---TCCAACCTATGAGGATAGCTCCAGAGCTCGATGGTCT 269
||||| |||||||||||||| ||||||| |||||||||||||||||||| || ||| |
Sbjct 164 AAAGAATAATAAGAAGAAGAAGATCCAACCGATGAGGATAGCTCCAGAGCTTGACGGTGT 223
Query 270 TCATTGTTTTGAAACTATTCTTCCTTTTTAATGATCATGAT 310
|||||||||||||||||||||||| |||| |||||||||||
Sbjct 224 TCATTGTTTTGAAACTATTCTTCCATTTTGATGATCATGAT 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14193879108
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5