BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54170.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950049 jgi|Araly1|950049|scaffold_801936.1 2161 0.0
> Ahg950049 jgi|Araly1|950049|scaffold_801936.1
Length=1391
Score = 2161 bits (1170), Expect = 0.0
Identities = 1327/1400 (95%), Gaps = 21/1400 (2%)
Strand=Plus/Plus
Query 150 TACTTATCCTCTGCAAAGTTATGGCTTTGCTTGAGAGTATAATATTAGGGCTAATCACAG 209
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TACTTATCCTCTGCAAAGTTATGGCTTTGCTTGAGAGTATAATCTTAGGGCTAATCACAG 60
Query 210 GATGGTTAGCTTTTGTTATTGGGTTGGTTATTGGATGGGCATGGAAACCAAGATGGG--- 266
||||||||||||||||| |||| ||| ||||||||||| | ||||||||||||||||
Sbjct 61 GATGGTTAGCTTTTGTTGTTGGATTGATTATTGGATGGACTTGGAAACCAAGATGGGTTT 120
Query 267 --T-TTC-T--TCTTCTAATAATCGACAAGTCAAATTACAATGTTCTGCTCCAAGATCTT 320
| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CTTCTTCTTCATCTTCTAATAATCGACAAGTTAAATTACAATGTTCTGCTCCAAGATCTT 180
Query 321 TTGATTTGTCTTTACCATCTTCTTCTCCTAGTTCTGTTGTTACTTCTCCTTTGAAGGGTT 380
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 181 TTGATTTGTCTTTACCATCTTCTTCTCCAAGTTCTGTTGTTACTTCTCCTTTAAAGGGTT 240
Query 381 TTGGATCAGCTCCTTGCTTAAAGGCTCTTGTTTGTGATACATGGACTATGGCTTTAAGAC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGGATCAGCTCCTTGCTTAAAGGCTCTTGTTTGTGATACATGGACTATGGCTTTAAGAC 300
Query 441 AACAGAGACAAACAGTTTCTCCTGATTCTTCTTCTTCTTCATATGATTCTTCTGAACAAC 500
||||||| |||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 301 AACAGAG---AACAGTTTCTCCTGATTCTTCTTCGTCATCATCTGATTCTTCTGAACAAC 357
Query 501 ATTTGGATTTGGTTTCAAGAGTGAAGAAAACAAAGGAGAGATTGCCTAATACTGTAACAG 560
|| ||| ||| |||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 358 ATGTGGGTTTACTTTCAAGAGTGAAGAAAACAGAGGAGAGATTGCCTAATACTGTTACTG 417
Query 561 AGTTAGATTTGAGACATCTTGTGCAATTGGTTGAGAGGAAAGATGGTGGTCAAGCTTGGA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGTTAGATTTGAGACATCTTGTGCAATTGGTTGAGAGGAAAGATGGTGGTCAAGCTTGGA 477
Query 621 TTCAGATGATGGATCGTTTTACTCCTGGTATGAGATACCAAGCTTGGTTGAGAGAACCTA 680
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 TTCAGATGATGGATCGTTTTACTCCTGGTATGAGATATCAAGCTTGGTTGAGAGAACCTA 537
Query 681 AGAATGGTCCTACTGAGTATAGAAGTAGAACTGTGTTTGAAGATGCAACTCCTGTGATGT 740
||||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||| |
Sbjct 538 AGAATGGTCCTACTGAGTACAGAAGCAAAACTGTGTTTGAAGATGCAACTCCTGAGATTT 597
Query 741 TAAGAGACTTTTTCTGGGATGATGAGTTTAGACCAACTTGGGATACAATGCTTTCTAATT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TAAGAGACTTTTTCTGGGATGATGAGTTTAGACCAACTTGGGATACAATGCTTTCTAATT 657
Query 801 CCACTACTGTTGAAGAGTGTCCCAGTACTGGAACCATGATTGTTAGATGGATACGCAAGT 860
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 658 CCACAACTGTTGAAGAGTGTCCAAGTACTGGAACCATGATTGTTAGATGGATACGCAAGT 717
Query 861 TCCCGTTCTTCTGCAGTGATAGAGAGTATGTAATCGGTCGCAGGATATGGAATTGTGGAA 920
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 TCCCGTTCTTCTGCAGTGATAGAGAGTATGTGATCGGTCGCAGGATATGGAATTGTGGAA 777
Query 921 ACTCTTATTACTGTGTTACAAAGGGAGTATCGGTTCCTTCTATACCGCCTAACAACAAAC 980
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ACTCTTATTATTGTGTTACAAAGGGAGTATCGGTTCCTTCTATACCGCCTAACAACAAAC 837
Query 981 AAAAACGCGTGGATTTGTTCTACTCAAGCTGGTGCATTCGACCAGTGGAATCAAGAAGAG 1040
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 838 AAAAACGCGTGGATTTGTTCTACTCGAGCTGGTGCATTCGACCAGTTGAATCAAGAAGAG 897
Query 1041 ACGATGGGGTAACAAGTGCCTGCGAAGTACTTCTATTCCACCACGAAGACATGGGAATAC 1100
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 898 ACGATGGAGTAACAAGTGCCTGCGAAGTACTTCTATTCCACCACGAAGACATGGGGATAC 957
Query 1101 CTAGAGAAATCGCAAAGCTTGGAGTGAAACGAGGAATGTGGGGAGCAGTGAAGAAGATGG 1160
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CGAGAGAAATCGCAAAGCTTGGAGTGAAACGAGGAATGTGGGGAGCAGTGAAGAAGATGG 1017
Query 1161 AACCCGGTTTACGTGCTTACCAAACGCATAGACTCTCAGATGGAGGAACCAAGCTTTCTC 1220
|||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 1018 AACCCGGTTTACGTGCTTACCAAACGCAAAGACTCTCAG--G-AGGAACCAAGCTTTCTC 1074
Query 1221 GGTCTGCTTTCATGGCTCAAATCAACACCAAGATCACACAAGACCATCTCATCTCCCTCA 1280
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct 1075 GGTCTGCTTTCATGGCCCAAATCAACACCAAGATCACACAAGACCATCTCATTTCGCTAA 1134
Query 1281 GCAACGGTGCATCGCCTGTCACTGAAACTCCCGTTACATTAAACCAAGGAAACCGAGCTG 1340
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1135 GCAACGGCGCATCGCCTGTCACTGAAACTCCCGTTACATTGAATCAAGGAAACCGAGCTG 1194
Query 1341 CGAATCTGAAGAAACTGTTGATTATCGGTGGAGCTGTTGCGGTTGTCTGCAGTTTAAGCG 1400
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1195 CAAATCTGAAGAAACTGTTGATTATCGGTGGAGCTGTAGCGGTTGTTTGCAGTTTGAGCG 1254
Query 1401 GAGGTGCTTTTGTTCCTCCTGCGTTTCTTTTAGGTTTTGGGAAAAGGTTTGTTAATGGTG 1460
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1255 GAGGGGCTTTTGTTCCTCCTGCGTTTCTTTTAGGGTTTGGGAAGAGGTTTGTTAATGGTG 1314
Query 1461 GAAGAAAACGTCAGCTCGAAGGAACAACAAGAAGTGAGAGTCAGACTACTTCTTCATAGA 1520
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 1315 GAAGAAAACGTCAGCTCGAAGGAACAACAAG---TCAGAGTCAGACTACTTCTCCATAGA 1371
Query 1521 A---TCTTGAGACCAAGAAT 1537
| |||||| |||||||||
Sbjct 1372 AGAATCTTGAAACCAAGAAT 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5